HL_3V11_002

3D structure

PDB id

3V11 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

G(OMC)UCAUAAC

Length

9 nucleotides

Bulged bases

3V11|1|D|U|33, 3V11|1|D|A|37

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3V11_002 not in the Motif Atlas

Homologous match to HL_5L4O_002

Geometric discrepancy: 0.31

The information below is about HL_5L4O_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3V11|1|D|G|31
3V11|1|D|OMC|32
3V11|1|D|U|33
3V11|1|D|C|34
3V11|1|D|A|35
3V11|1|D|U|36
3V11|1|D|A|37
3V11|1|D|A|38
3V11|1|D|C|39

Current chains

Chain D

Initiator tRNA

Nearby chains