HL_3V2F_043

3D structure

PDB id

3V2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YfiA bound to the 70S ribosome. This PDB entry contains coordinates for the 50S subunit of the 2nd ribosome in the ASU

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

3V2F|1|A|A|1780, 3V2F|1|A|C|1781, 3V2F|1|A|C|1782, 3V2F|1|A|A|1786

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85534.1

Basepair signature

cWW-tWH-tWH-R

Number of instances in this motif group

5

Unit IDs

3V2F|1|A|U|1777
3V2F|1|A|U|1778
3V2F|1|A|U|1779
3V2F|1|A|A|1780
3V2F|1|A|C|1781
3V2F|1|A|C|1782
3V2F|1|A|A|1783
3V2F|1|A|A|1784
3V2F|1|A|A|1785
3V2F|1|A|A|1786
3V2F|1|A|A|1787

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S Ribosomal Protein L34

Chain D

50S Ribosomal Protein L2

Chain W

50S Ribosomal Protein L22