Motif HL_85534.1 Version HL_85534.1 of this group appears in releases 0.3 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_046 | 3U5H | 0.4498 | 4 | 5 | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 2 | HL_3V2F_043 | 3V2F | 0.4141 | 4 | A | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | tWH |
| 3 | HL_4A1B_045 | 4A1B | 0.0000 | 4 | 1 | U | 2131 | U | 2132 | U | 2133 | A | 2137 | A | 2138 | A | 2139 | A | 2141 | cWW | tWH | |
| 4 | HL_2QBG_047 | 2QBG | 0.0856 | 4 | B | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | |
| 5 | HL_1S72_047 | 1S72 | 0.1367 | 4 | 0 | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAAAA | 1 |
| UUUACCAAAAA | 1 |
| UUUAAUAAAAA | 1 |
| UUUAUUAAAAA | 1 |
| UCUAGUAACAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUAAA | 1 |
| UUACCAAAA | 1 |
| UUAAUAAAA | 1 |
| UUAUUAAAA | 1 |
| CUAGUAACA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_85534.1 | Only in the parent motif |
|---|---|---|---|
| HL_65994.1 Compare | HL_2QBG_047, HL_1S72_047 | HL_4A1B_045, HL_3V2F_043, HL_3U5H_046 | HL_3O58_046 |
Children motifs
| Child motif | Common motif instances | Only in HL_85534.1 | Only in the child motif |
|---|---|---|---|
| HL_85534.2 Compare | HL_4A1B_045, HL_3U5H_046, HL_2QBG_047, HL_1S72_047 | HL_3V2F_043 | HL_4NVV_043, HL_1VW3_032 |
- Annotations
-
- (5)
- Basepair signature
- cWW-tWH-tWH-R
- Heat map statistics
- Min 0.09 | Avg 0.26 | Max 0.49
Coloring options: