HL_3W1K_025

3D structure

PDB id

3W1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the selenocysteine synthase SelA and tRNASec complex

Experimental method

X-RAY DIFFRACTION

Resolution

7.5 Å

Loop

Sequence

CUGGUG

Length

6 nucleotides

Bulged bases

3W1K|1|G|G|18||||2_556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3W1K_025 not in the Motif Atlas

Geometric match to HL_3RG5_005

Geometric discrepancy: 0.2068

The information below is about HL_3RG5_005

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_18141.3

Basepair signature

cWW-F-cSH

Number of instances in this motif group

6

Unit IDs

3W1K|1|G|C|15||||2_556
3W1K|1|G|U|16||||2_556
3W1K|1|G|G|18||||2_556
3W1K|1|G|G|19||||2_556
3W1K|1|G|U|20||||2_556
3W1K|1|G|G|20|||A|2_556

Current chains

Chain G

selenocysteine tRNA

Nearby chains

Chain A

L-seryl-tRNA(Sec) selenium transferase