3W1K Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3W1K_001 | 1/F/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_002 | 1/F/31:39 | tRNA anticodon loop | homologous HL_3W3S_002 HL_81376.3 | |
| HL_3W1K_003 | 1/F/47D:47J | No text annotation | geometric HL_5J7L_151 NA | |
| HL_3W1K_004 | 1/F/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_005 | 1/G/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_006 | 1/G/31:39 | tRNA anticodon loop | homologous HL_3RG5_006 HL_87268.3 | |
| HL_3W1K_008 | 1/G/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_009 | 1/H/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_010 | 1/H/31:39 | tRNA anticodon loop | homologous HL_3W3S_002 HL_81376.3 | |
| HL_3W1K_012 | 1/H/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_013 | 1/I/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_014 | 1/I/31:39 | tRNA anticodon loop | homologous HL_3RG5_006 HL_87268.3 | |
| HL_3W1K_015 | 1/I/47D:47J | GNRA | homologous HL_3RG5_007 HL_34789.5 | |
| HL_3W1K_016 | 1/I/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_017 | 1/J/15:20A | tRNA D-loop | homologous HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_018 | 1/J/31:39 | tRNA anticodon loop | homologous HL_3W3S_002 HL_81376.3 | |
| HL_3W1K_019 | 1/J/47D:47J | GNRA | homologous HL_3RG5_007 HL_34789.5 | |
| HL_3W1K_020 | 1/J/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_021 | 1/F/15:20A | tRNA D-loop | geometric HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_022 | 1/F/31:39 | Anticodon loop related | geometric HL_5T83_002 HL_81376.3 | |
| HL_3W1K_023 | 1/F/47D:47J | No text annotation | geometric HL_5J7L_151 NA | |
| HL_3W1K_024 | 1/F/53:61 | T-loop with 2 stacked bulged bases | geometric HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_025 | 1/G/15:20A | tRNA D-loop | geometric HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_026 | 1/G/31:39 | Anticodon loop related | geometric HL_5T83_002 HL_81376.3 | |
| HL_3W1K_028 | 1/G/53:61 | T-loop with 2 stacked bulged bases | geometric HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_029 | 1/H/15:20A | tRNA D-loop | geometric HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_030 | 1/H/31:39 | Anticodon loop related | geometric HL_5T83_002 HL_81376.3 | |
| HL_3W1K_032 | 1/H/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5WWT_002 HL_33597.4 | |
| HL_3W1K_033 | 1/I/15:20A | tRNA D-loop | geometric HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_034 | 1/I/31:39 | Anticodon loop related | geometric HL_5T83_002 HL_81376.3 | |
| HL_3W1K_035 | 1/I/47D:47J | No text annotation | geometric HL_1F1T_001 NA | |
| HL_3W1K_036 | 1/I/53:61 | T-loop with 2 stacked bulged bases | geometric HL_3W3S_004 HL_33597.4 | |
| HL_3W1K_037 | 1/J/15:20A | tRNA D-loop | geometric HL_3RG5_005 HL_18141.3 | |
| HL_3W1K_038 | 1/J/31:39 | tRNA anticodon loop | geometric HL_1U0B_002 HL_81376.3 | |
| HL_3W1K_039 | 1/J/47D:47J | No text annotation | geometric HL_8B0X_056 HL_67772.2 | |
| HL_3W1K_040 | 1/J/53:61 | T-loop with 2 stacked bulged bases | geometric HL_5WWT_002 HL_33597.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3W1K_007 | GNRA related | ||
| HL_3W1K_011 | No text annotation | ||
| HL_3W1K_027 | No text annotation | ||
| HL_3W1K_031 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3W1K_001 | 1/F/27:28, 1/F/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_002 | 1/G/27:28, 1/G/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_003 | 1/H/27:28, 1/H/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_005 | 1/J/27:28, 1/J/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_006 | 1/F/27:28, 1/F/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_007 | 1/G/27:28, 1/G/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_008 | 1/H/27:28, 1/H/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 | |
| IL_3W1K_010 | 1/J/27:28, 1/J/42:43 | Single bulged C | geometric IL_3W3S_001 IL_05642.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3W1K_004 | Single bulged C | ||
| IL_3W1K_009 | Single bulged C |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_3W1K_001 | 1/F/6:10, 1/F/25:26, 1/F/44:45, 1/F/47:49, 1/F/65:67 | No text annotation | ||
| J5_3W1K_002 | 1/G/6:10, 1/G/25:26, 1/G/44:45, 1/G/47:49, 1/G/65:67 | No text annotation | ||
| J5_3W1K_003 | 1/H/6:10, 1/H/25:26, 1/H/44:45, 1/H/47:49, 1/H/65:67 | No text annotation | ||
| J5_3W1K_004 | 1/I/6:10, 1/I/25:26, 1/I/44:45, 1/I/47:49, 1/I/65:67 | No text annotation | ||
| J5_3W1K_005 | 1/J/6:10, 1/J/25:26, 1/J/44:45, 1/J/47:49, 1/J/65:67 | No text annotation | ||
| J5_3W1K_006 | 1/F/6:10, 1/F/25:26, 1/F/44:45, 1/F/47:49, 1/F/65:67 | No text annotation | ||
| J5_3W1K_007 | 1/G/6:10, 1/G/25:26, 1/G/44:45, 1/G/47:49, 1/G/65:67 | No text annotation | ||
| J5_3W1K_008 | 1/H/6:10, 1/H/25:26, 1/H/44:45, 1/H/47:49, 1/H/65:67 | No text annotation | ||
| J5_3W1K_009 | 1/I/6:10, 1/I/25:26, 1/I/44:45, 1/I/47:49, 1/I/65:67 | No text annotation | ||
| J5_3W1K_010 | 1/J/6:10, 1/J/25:26, 1/J/44:45, 1/J/47:49, 1/J/65:67 | No text annotation |
Problematic loops
No problematic loops
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