HL_486D_012

3D structure

PDB id

486D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-RAY CRYSTAL STRUCTURES OF 70S RIBOSOME FUNCTIONAL COMPLEXES

Experimental method

X-RAY DIFFRACTION

Resolution

7.5 Å

Loop

Sequence

(PSU)AA(H2U)GG(H2U)CAG

Length

10 nucleotides

Bulged bases

486D|1|E|H2U|16, 486D|1|E|G|17, 486D|1|E|G|18

QA status

Modified nucleotides: PSU, H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_486D_012 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.327

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

486D|1|E|PSU|13
486D|1|E|A|14
486D|1|E|A|15
486D|1|E|H2U|16
486D|1|E|G|17
486D|1|E|G|18
486D|1|E|H2U|19
486D|1|E|C|20
486D|1|E|A|21
486D|1|E|G|22

Current chains

Chain E

E-SITE TRNA OF 70S RIBOSOME

Nearby chains