486D Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_486D_010 | 1/A/13:22 | No text annotation | homologous HL_4YYE_001 NA | |
| HL_486D_011 | 1/A/30:40 | No text annotation | homologous HL_5IB8_208 HL_14063.2 | |
| HL_486D_003 | 1/A/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA | |
| HL_486D_004 | 1/C/13:22 | No text annotation | homologous HL_3WFS_001 NA | |
| HL_486D_005 | 1/C/31:39 | tRNA anticodon loop | homologous HL_6ORD_036 NA | |
| HL_486D_006 | 1/C/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.4 | |
| HL_486D_012 | 1/E/13:22 | No text annotation | homologous HL_4YYE_001 NA | |
| HL_486D_008 | 1/E/31:39 | tRNA anticodon loop | homologous HL_1U0B_002 HL_81376.3 | |
| HL_486D_009 | 1/E/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_486D_001 | No text annotation | ||
| HL_486D_002 | No text annotation | ||
| HL_486D_007 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_486D_001 | 1/A/7:10, 1/A/25:27, 1/A/43:49, 1/A/65:66 | tRNA junction | homologous J4_1IL2_001 J4_95067.1 | |
| J4_486D_002 | 1/C/7:10, 1/C/25:27, 1/C/43:49, 1/C/65:66 | tRNA junction | homologous J4_7EQJ_002 J4_95067.1 | |
| J4_486D_003 | 1/E/7:10, 1/E/25:27, 1/E/43:49, 1/E/65:66 | tRNA junction | homologous J4_5HR6_001 J4_95067.1 |
Problematic loops
No problematic loops
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