HL_488D_002

3D structure

PDB id

488D (explore in PDB, NAKB, or RNA 3D Hub)

Description

CATALYTIC RNA ENZYME-PRODUCT COMPLEX

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67042.17

Basepair signature

cWW-tSH-R-R

Number of instances in this motif group

328

Unit IDs

488D|1|D|C|154
488D|1|D|G|31|||L
488D|1|D|U|32|||L
488D|1|D|A|33|||L
488D|1|D|A|34|||L
488D|1|D|G|164

Current chains

Chain D

UNCLEAVED RNA SUBSTRATE

Nearby chains

Chain A

RNA RIBOZYME STRAND

Chain B

FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE