Motif HL_67042.17 Version HL_67042.17 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_2QBG_049	2QBG	0.6585	0		B	23S rRNA	C	1868	G	1869	C	1870	A	1871	A	1872	G	1873	cWW	tSH
2	HL_2AW7_010	2AW7	0.5675	0		A	16S ribosomal RNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW	ntSH
3	HL_2QBG_048	2QBG	0.6422	0		B	23S rRNA	C	1806	G	1807	A	1808	A	1809	A	1810	G	1811	cWW	ntSH
4	HL_4KQY_002	4KQY	0.4019	0	GNRA	A	SAM-I riboswitch	C	60	G	61	A	62	A	63	A	64	G	65	ncWW	ntSH
5	HL_1VX6_020	1VX6	0.4932	0		A	28S ribosomal RNA	C	963	G	964	A	965	A	966	A	967	G	968	ncWW	ntSH
6	HL_4CUV_019	4CUV	0.4198	0		1	25S RRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW
7	HL_4W21_040	4W21	0.5202	0		5	28S ribosomal RNA	G	2705	G	2706	U	2707	U	2708	C	2709	C	2710	cWW
8	HL_3U5H_033	3U5H	0.4607	0		5	25S rRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
9	HL_4CUV_033	4CUV	0.4408	0		1	25S RRNA	G	1544	A	1545	A	1546	G	1547	C	1548	U	1549	cWW
10	HL_3Q1Q_008	3Q1Q	0.2677	0		B	RNase P RNA	G	284	G	285	U	286	A	287	A	288	C	289	cWW
11	HL_3Q1Q_003	3Q1Q	0.3066	0		B	RNase P RNA	G	92	G	93	U	94	G	95	A	96	C	97	cWW
12	HL_1FJG_028	1FJG	0.3042	0	GNRA (H)	A	SSU rRNA	G	1265	G	1266	C	1267	A	1268	A	1269	C	1270	cWW
13	HL_4FAW_003	4FAW	0.3085	0		A	Group II catalytic intron D1-D4-3	G	89	G	90	C	91	G	92	A	93	C	94	cWW
14	HL_2HO7_004	2HO7	0.3451	0		B	glmS ribozyme RNA	G	113	G	114	C	115	G	116	A	117	C	118	cWW
15	HL_3Q1Q_006	3Q1Q	0.3849	0		B	RNase P RNA	G	187	G	188	C	189	A	190	A	191	C	192	cWW
16	HL_4BPP_028	4BPP	0.3590	0		A	18S RRNA	A	1268	G	1269	U	1270	G	1271	A	1272	U	1273	cWW
17	HL_3U5F_029	3U5F	0.3268	0		6	18S rRNA	A	1296	G	1297	U	1298	G	1299	A	1300	U	1301	cWW
18	HL_4A1B_035	4A1B	0.3258	0		1	26S RRNA	G	1658	G	1659	U	1660	A	1661	A	1662	C	1663	cWW
19	HL_1VW3_054	1VW3	0.2927	0		A	21S ribosomal RNA	U	2861	G	2862	U	2863	G	2864	A	2865	A	2866	cWW	ntSH
20	HL_4CUV_036	4CUV	0.3443	0		1	25S RRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW
21	HL_3U5H_036	3U5H	0.3593	0		5	25S rRNA	G	1634	G	1635	U	1636	A	1637	A	1638	C	1639	cWW
22	HL_1VX6_035	1VX6	0.3536	0		A	28S ribosomal RNA	G	1783	G	1784	U	1785	A	1786	A	1787	C	1788	cWW
23	HL_4CUV_010	4CUV	0.3126	0		1	25S RRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
24	HL_3U5H_010	3U5H	0.2949	0		5	25S rRNA	A	357	G	358	U	359	G	360	A	361	U	362	cWW
25	HL_2NZ4_016	2NZ4	0.3013	0		S	GlmS ribozyme	G	108	G	109	U	110	G	111	A	112	C	113	cWW
26	HL_2NZ4_012	2NZ4	0.2529	0		R	GlmS ribozyme	G	108	G	109	U	110	G	111	A	112	C	113	cWW
27	HL_4IOA_068	4IOA	0.2828	0	GNRA	X	LSU rRNA	A	2831	G	2832	C	2833	A	2834	A	2835	U	2836	cWW
28	HL_1Y0Q_003	1Y0Q	0.2923	0		A	Group I catalytic intron	A	101	G	102	U	103	A	104	A	105	U	106	cWW	ntSH
29	HL_4OO8_003	4OO8	0.2453	0		B	RNA (97-MER)	U	72	G	73	A	74	A	75	A	76	A	77	ncWW	ntSH
30	HL_1M5O_004	1M5O	0.5503	0		E	RNA HAIRPIN RIBOZYME	G	74	G	75	A	76	A	77	A	78	C	79	ncWW
31	HL_1MFQ_001	1MFQ	0.4964	0	GNRA variation	A	SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
32	HL_1JID_001	1JID	0.4682	0	GNRA variation	B	HELIX 6 OF HUMAN SRP RNA	G	146	G	147	G	148	A	149	G	150	C	151	cWW
33	HL_1FJG_016	1FJG	0.3954	0	GNRA (H)	A	SSU rRNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
34	HL_2AW7_016	2AW7	0.3533	0		A	16S ribosomal RNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
35	HL_1G1X_003	1G1X	0.3807	0	GNRA	E	16S RIBOSOMAL RNA	C	726	G	727	A	728	A	729	G	730	G	731	cWW
36	HL_4L81_004	4L81	0.3438	0		A	SAM-I/IV variant riboswitch aptamer domain	C	76	G	77	A	78	G	79	A	80	G	81	cWW
37	HL_3J7A_019	3J7A	0.2894	0	GNRA (H)	A	SSU rRNA	C	1006	G	1007	A	1008	A	1009	A	1010	G	1011	cWW
38	HL_4BPP_021	4BPP	0.3032	0		A	18S RRNA	C	915	G	916	A	917	A	918	A	919	G	920	cWW
39	HL_3U5F_022	3U5F	0.3624	0		6	18S rRNA	C	937	G	938	A	939	A	940	A	941	G	942	cWW
40	HL_4CUX_022	4CUX	0.3838	0		2	18S RRNA	C	937	G	938	A	939	A	940	A	941	G	942	cWW
41	HL_2QBG_033	2QBG	0.5671	0		B	23S rRNA	U	1222	G	1223	U	1224	G	1225	A	1226	G	1227	cWW
42	HL_4IOA_030	4IOA	0.6347	0	GNRA	X	LSU rRNA	C	1235	G	1236	G	1237	A	1238	A	1239	G	1240	cWW
43	HL_4W21_037	4W21	0.4768	0		5	28S ribosomal RNA	G	2578	G	2579	U	2580	A	2581	A	2582	C	2583	cWW
44	HL_4W21_030	4W21	0.5239	0		5	28S ribosomal RNA	C	2317	G	2318	C	2319	G	2320	G	2321	G	2322	cWW
45	HL_4W21_010	4W21	0.3614	0		5	28S ribosomal RNA	C	368	G	369	U	370	A	371	A	372	G	373	cWW
46	HL_4W21_064	4W21	0.3131	0		5	28S ribosomal RNA	C	4540	G	4541	U	4542	G	4543	A	4544	G	4545	cWW	ntSH
47	HL_4W23_023	4W23	0.2839	0		2	18S ribosomal RNA	U	1178	G	1179	C	1180	A	1181	A	1182	A	1183	cWW	ntSH
48	HL_4R0D_003	4R0D	0.3302	0		A	Group II catalytic intron	A	87	G	88	U	89	A	90	A	91	U	92	cWW
49	HL_4BPP_032	4BPP	0.2737	0		A	18S RRNA	U	1472	G	1473	G	1474	G	1475	A	1476	A	1477	cWW
50	HL_1VX6_064	1VX6	0.2517	0		A	28S ribosomal RNA	C	3322	G	3323	U	3324	G	3325	A	3326	G	3327	cWW	ntSH
51	HL_4QCN_061	4QCN	0.3017	0		A	23S Ribosomal RNA	C	2606	G	2607	U	2608	G	2609	A	2610	G	2611	cWW	ntSH
52	HL_4A1B_064	4A1B	0.3365	0		1	26S RRNA	C	2951	G	2952	U	2953	G	2954	A	2955	G	2956	cWW
53	HL_4IOA_062	4IOA	0.3342	0	GNRA	X	LSU rRNA	C	2573	G	2574	U	2575	G	2576	A	2577	G	2578	cWW	ntSH
54	HL_2AW7_028	2AW7	0.3763	0		A	16S ribosomal RNA	C	1265	G	1266	C	1267	G	1268	A	1269	G	1270	cWW
55	HL_4QCN_067	4QCN	0.3629	0		A	23S Ribosomal RNA	C	2866	G	2867	C	2868	G	2869	A	2870	G	2871	cWW
56	HL_1VX6_029	1VX6	0.3585	0		A	28S ribosomal RNA	C	1551	G	1552	U	1553	G	1554	A	1555	G	1556	cWW
57	HL_3U5H_065	3U5H	0.2916	0		5	25S rRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW
58	HL_1S72_065	1S72	0.3253	0	GNRA (H)	0	LSU rRNA	C	2629	G	2630	U	2631	G	2632	A	2633	G	2634	cWW
59	HL_2QBG_065	2QBG	0.3064	0		B	23S rRNA	C	2594	G	2595	U	2596	G	2597	A	2598	G	2599	cWW
60	HL_4CUV_065	4CUV	0.3363	0		1	25S RRNA	C	2963	G	2964	U	2965	G	2966	A	2967	G	2968	cWW
61	HL_1S72_017	1S72	0.3141	0	GNRA (H)	0	LSU rRNA	C	576	G	577	C	578	G	579	A	580	G	581	cWW
62	HL_3W3S_003	3W3S	0.3281	0	GNRA	B	Selenocysteine transfer RNA	C	47\|\|\|F	G	47\|\|\|G	C	47\|\|\|H	A	47\|\|\|I	A	47\|\|\|J	G	47\|\|\|K	cWW
63	HL_2BTE_007	2BTE	0.3482	0	GNRA (H)	E	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW
64	HL_1VX6_010	1VX6	0.3443	0		A	28S ribosomal RNA	C	365	G	366	U	367	G	368	A	369	G	370	cWW
65	HL_1S72_015	1S72	0.3347	0	GNRA (H)	0	LSU rRNA	U	468	G	469	U	470	G	471	A	472	A	473	cWW
66	HL_4A1B_010	4A1B	0.3212	0		1	26S RRNA	U	356	G	357	C	358	G	359	A	360	A	361	cWW
67	HL_2AW7_024	2AW7	0.3687	0		A	16S ribosomal RNA	U	1076	G	1077	U	1078	G	1079	A	1080	A	1081	cWW
68	HL_1Q96_003	1Q96	0.3977	0		C	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW
69	HL_4LVZ_002	4LVZ	0.3573	0		A	THF riboswitch	C	58	G	59	A	60	G	61	A	62	G	63	cWW
70	HL_3NKB_002	3NKB	0.3069	0	GNRA	B	Hepatitis delta virus ribozyme	C	49	G	50	A	51	A	52	A	53	G	54	cWW
71	HL_4QK9_002	4QK9	0.2993	0	GNRA	A	C-di-AMP riboswitch	C	56	G	57	U	58	A	59	A	60	G	61	cWW
72	HL_1VW3_009	1VW3	0.2607	0		A	21S ribosomal RNA	C	393	G	394	U	395	A	396	A	397	G	398	cWW
73	HL_4IOA_014	4IOA	0.3140	0	GNRA	X	LSU rRNA	C	473	G	474	U	475	G	476	A	477	G	478	cWW
74	HL_4QCN_014	4QCN	0.2786	0		A	23S Ribosomal RNA	C	488	G	489	U	490	G	491	A	492	G	493	cWW
75	HL_2QBG_016	2QBG	0.2768	0		B	23S rRNA	C	462	G	463	U	464	G	465	A	466	G	467	cWW
76	HL_4QCN_030	4QCN	0.3394	0		A	23S Ribosomal RNA	C	1268	G	1269	C	1270	G	1271	A	1272	G	1273	cWW
77	HL_2OIU_003	2OIU	0.2787	0	GNRA	P	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW
78	HL_3E5C_002	3E5C	0.3084	0	GNRA	A	SMK box (SAM-III) Riboswitch	C	41	G	42	A	43	A	44	A	45	G	46	cWW
79	HL_4PQV_001	4PQV	0.3561	0	GNRA	A	Flavivirus 3' UTR stem loop IV	C	13	G	14	A	15	A	16	A	17	G	18	cWW
80	HL_3NPN_001	3NPN	0.4190	0		A	S-ADENOSYLHOMOCYSTEINE RIBOSWITCH	C	20	G	21	A	22	A	23	A	24	G	25	cWW
81	HL_3ADC_003	3ADC	0.3848	0	GNRA (H)	C	Selenocysteine transfer RNA	C	47\|\|\|D	G	47\|\|\|E	A	47\|\|\|F	G	47\|\|\|G	U	47\|\|\|H	G	47\|\|\|I	cWW
82	HL_2BTE_003	2BTE	0.4119	0	GNRA	B	tRNA	C	46	G	47	C	47\|\|\|A	A	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	cWW
83	HL_4CUV_030	4CUV	0.4190	0		1	25S RRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW
84	HL_1FJG_024	1FJG	0.3889	0	GNRA (H)	A	SSU rRNA	C	1076	G	1077	U	1078	G	1079	A	1080	G	1081	cWW
85	HL_3U5H_030	3U5H	0.4192	0		5	25S rRNA	C	1403	G	1404	U	1405	A	1406	A	1407	G	1408	cWW
86	HL_4A1B_029	4A1B	0.4636	0		1	26S RRNA	C	1429	G	1430	U	1431	G	1432	A	1433	G	1434	cWW
87	HL_1S72_033	1S72	0.4357	0	GNRA (H)	0	LSU rRNA	U	1326	G	1327	A	1328	A	1329	A	1330	A	1331	cWW
88	HL_4C7O_001	4C7O	0.3436	0	GNRA	E	SRP RNA	C	19	G	20	G	21	A	22	A	23	G	24	cWW
89	HL_2QBG_059	2QBG	0.3176	0		B	23S rRNA	U	2356	G	2357	A	2358	C	2359	G	2360	G	2361	cWW
90	HL_4W21_059	4W21	0.3085	0		5	28S ribosomal RNA	U	4321	G	4322	A	4323	A	4324	A	4325	G	4326	cWW
91	HL_1VX6_059	1VX6	0.2361	0		A	28S ribosomal RNA	U	3083	G	3084	A	3085	A	3086	A	3087	G	3088	cWW
92	HL_3U5H_060	3U5H	0.2907	0		5	25S rRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW
93	HL_4CUV_060	4CUV	0.3151	0		1	25S RRNA	U	2744	G	2745	A	2746	A	2747	A	2748	G	2749	cWW
94	HL_4QCN_045	4QCN	0.3072	0		A	23S Ribosomal RNA	U	1895	G	1896	C	1897	A	1898	A	1899	G	1900	cWW
95	HL_3U5H_016	3U5H	0.3240	0		5	25S rRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW
96	HL_4CUV_016	4CUV	0.3273	0		1	25S RRNA	U	707	G	708	A	709	A	710	A	711	G	712	cWW
97	HL_4IOA_046	4IOA	0.3576	0	GNRA	X	LSU rRNA	U	1856	G	1857	C	1858	A	1859	A	1860	G	1861	cWW
98	HL_4QCN_069	4QCN	0.2943	0		B	5S Ribosomal RNA	G	86	G	87	C	88	G	89	A	90	C	91	cWW
99	HL_4IOA_070	4IOA	0.3695	0	GNRA	Y	5S rRNA	C	88	G	89	C	90	A	91	G	92	G	93	cWW
100	HL_2QBG_060	2QBG	0.2205	0		B	23S rRNA	C	2374	G	2375	A	2376	A	2377	A	2378	G	2379	cWW
101	HL_4P8Z_005	4P8Z	0.2543	0		A	Lariat capping ribozyme	C	157	G	158	A	159	A	160	A	161	G	162	cWW
102	HL_4P9R_006	4P9R	0.3012	0		A	RNA (189-MER)	C	567	G	568	A	569	A	570	A	571	G	572	cWW
103	HL_2ZZM_003	2ZZM	0.3035	0	GNRA	B	RNA (84-MER)	C	47	G	47\|\|\|A	U	47\|\|\|B	A	47\|\|\|C	G	47\|\|\|D	G	47\|\|\|E	cWW
104	HL_1S72_060	1S72	0.2468	0	GNRA (H)	0	LSU rRNA	C	2411	G	2412	A	2413	A	2414	A	2415	G	2416	cWW
105	HL_4A1B_017	4A1B	0.2414	0		1	26S RRNA	C	732	G	733	A	734	A	735	A	736	G	737	cWW
106	HL_4IOA_019	4IOA	0.2937	0	GNRA	X	LSU rRNA	C	640	G	641	A	642	A	643	A	644	G	645	cWW
107	HL_488D_002	488D	0.3190	0		D	UNCLEAVED RNA SUBSTRATE	C	154	G	31\|\|\|L	U	32\|\|\|L	A	33\|\|\|L	A	34\|\|\|L	G	164	cWW
108	HL_488D_001	488D	0.3190	0		B	FIRST RNA FRAGMENT OF CLEAVED SUBSTRATE	C	154	G	31\|\|\|L	U	32\|\|\|L	A	33\|\|\|L	A	34\|\|\|L	G	164	cWW
109	HL_4R0D_015	4R0D	0.3340	0		A	Group II catalytic intron	A	600	G	601	A	602	G	603	A	604	U	605	ncWW
110	HL_2Y9B_001	2Y9B	0.2432	0		V	HOMO SAPIENS U4A SNRNA	U	812	G	813	A	814	A	815	A	816	A	817	cWW	ntSH
111	HL_3SUX_002	3SUX	0.2204	0	GNRA	X	THF riboswitch	C	65	G	66	A	67	A	68	A	69	G	70	cWW
112	HL_1Y0Q_004	1Y0Q	0.3277	0		A	Group I catalytic intron	C	130	G	131	A	132	U	133	A	134	G	135	cWW
113	HL_2Y9B_002	2Y9B	0.2595	0		V	HOMO SAPIENS U4A SNRNA	G	850	G	851	U	852	A	853	A	854	C	855	cWW	tSH
114	HL_2AW7_020	2AW7	0.2262	0		A	16S ribosomal RNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW	ntSH
115	HL_1S72_048	1S72	0.2132	0	GNRA (H)	0	LSU rRNA	C	1862	G	1863	C	1864	A	1865	A	1866	G	1867	cWW	ntSH
116	HL_4BPP_025	4BPP	0.1995	0		A	18S RRNA	C	1094	G	1095	C	1096	A	1097	A	1098	G	1099	cWW	ntSH
117	HL_1FJG_020	1FJG	0.1588	0	GNRA (H)	A	SSU rRNA	C	897	G	898	C	899	A	900	A	901	G	902	cWW	ntSH
118	HL_3U5F_026	3U5F	0.1714	0		6	18S rRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	cWW	ntSH
119	HL_3J7A_022	3J7A	0.1826	0	GNRA (H)	A	SSU rRNA	C	1222	G	1223	C	1224	A	1225	A	1226	G	1227	cWW	ntSH
120	HL_4CUX_026	4CUX	0.2321	0		2	18S RRNA	C	1121	G	1122	C	1123	A	1124	A	1125	G	1126	ncWW
121	HL_4QK9_001	4QK9	0.4495	0	GNRA variation	A	C-di-AMP riboswitch	C	14	U	15	G	16	A	17	A	18	G	19	cWW
122	HL_4W21_033	4W21	0.4115	0		5	28S ribosomal RNA	C	2458	G	2459	A	2460	G	2461	C	2462	G	2463	cWW
123	HL_1U6B_004	1U6B	0.4472	0	GNRA variation	B	197-MER	C	153	A	154	A	155	A	156	C	157	G	158	cWW
124	HL_4CUX_003	4CUX	0.5132	1		2	18S RRNA	G	154	U	155	A	156	A	157	U	158	C	160	cWW
125	HL_3U5F_003	3U5F	0.5345	1		6	18S rRNA	G	154	U	155	A	156	A	157	U	158	C	160	cWW
126	HL_4BPP_003	4BPP	0.6686	1		A	18S RRNA	C	148	U	149	A	150	A	151	U	152	G	154	cWW
127	HL_1VX6_017	1VX6	0.7262	0		A	28S ribosomal RNA	U	801	U	802	A	803	A	804	U	805	G	806	cWW
128	HL_4W23_030	4W23	0.5083	0		2	18S ribosomal RNA	C	1565	G	1566	G	1567	C	1568	A	1569	G	1570	cWW	ntSH
129	HL_3J7A_030	3J7A	0.5062	0	GNRA (H)	A	SSU rRNA	C	1797	G	1798	A	1799	A	1800	A	1801	G	1802	cWW	ntSH
130	HL_3U5F_033	3U5F	0.5558	0		6	18S rRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW	ntSH
131	HL_4CUX_033	4CUX	0.5999	0		2	18S RRNA	C	1501	G	1502	A	1503	G	1504	A	1505	G	1506	cWW	ntSH
132	HL_3J7A_013	3J7A	0.5862	0	GNRA variation (H)	A	SSU rRNA	C	576	A	577	G	578	C	579	C	580	G	581	cWW
133	HL_4BPP_015	4BPP	0.6123	0		A	18S RRNA	C	563	A	564	G	565	C	566	C	567	G	568	cWW
134	HL_3U5F_015	3U5F	0.6059	0		6	18S rRNA	C	569	A	570	G	571	C	572	C	573	G	574	cWW
135	HL_4CUX_015	4CUX	0.6604	0		2	18S RRNA	C	569	A	570	G	571	C	572	C	573	G	574	cWW
136	HL_3Q1Q_001	3Q1Q	0.6771	0		B	RNase P RNA	A	29	C	30	A	31	C	32	C	33	U	34	cWW
137	HL_3U5H_039	3U5H	0.5229	0		5	25S rRNA	A	1760	C	1761	C	1762	U	1763	U	1764	U	1765	ncWW
138	HL_4BPP_009	4BPP	0.6309	0		A	18S RRNA	U	359	U	360	A	361	G	362	G	363	G	364	cWW
139	HL_2AW7_013	2AW7	0.5299	0		A	16S ribosomal RNA	C	522	A	523	G	524	C	525	C	526	G	527	cWW
140	HL_1FJG_013	1FJG	0.5008	0		A	SSU rRNA	C	522	A	523	G	524	C	525	C	526	G	527	cWW
141	HL_4A1B_046	4A1B	0.4282	0		1	26S RRNA	U	2160	C	2161	A	2162	A	2163	C	2164	A	2165	cWW
142	HL_3J7A_034	3J7A	0.5138	0	GNRA variation (H)	A	SSU rRNA	G	2070	U	2071	G	2072	A	2073	A	2074	C	2075	cWW
143	HL_4BPP_036	4BPP	0.6252	0		A	18S RRNA	G	1731	U	1732	G	1733	A	1734	A	1735	C	1736	cWW
144	HL_4CUX_037	4CUX	0.5674	0		2	18S RRNA	G	1778	U	1779	G	1780	A	1781	A	1782	C	1783	cWW
145	HL_4W23_034	4W23	0.6418	0		2	18S ribosomal RNA	G	1847	U	1848	G	1849	A	1850	A	1851	C	1852	cWW
146	HL_3U5F_037	3U5F	0.5400	0		6	18S rRNA	G	1778	U	1779	G	1780	A	1781	A	1782	C	1783	cWW
147	HL_2AW7_032	2AW7	0.4706	0		A	16S ribosomal RNA	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	cWW
148	HL_1FJG_032	1FJG	0.5828	0	GNRA (H)	A	SSU rRNA	C	1515	G	1516	G	1517	A	1518	A	1519	G	1520	cWW
149	HL_2QBG_036	2QBG	0.4751	0		B	23S rRNA	C	1363	G	1364	A	1365	A	1366	A	1367	G	1368	cWW
150	HL_4QCN_033	4QCN	0.4657	0		A	23S Ribosomal RNA	C	1409	G	1410	A	1411	A	1412	A	1413	G	1414	cWW
151	HL_4IOA_033	4IOA	0.5690	0	GNRA variation	X	LSU rRNA	C	1376	G	1377	A	1378	A	1379	C	1380	G	1381	cWW
152	HL_1VW3_027	1VW3	0.6318	0		A	21S ribosomal RNA	A	1384	U	1385	A	1386	A	1387	A	1388	U	1389	cWW
153	HL_3J7A_007	3J7A	0.5818	0		A	SSU rRNA	U	374	U	375	A	376	G	377	A	378	G	379	cWW
154	HL_3RG5_003	3RG5	0.2996	0	GNRA (H)	A	Selenocysteine transfer RNA	U	47\|\|\|C	U	47\|\|\|D	A	47\|\|\|E	G	47\|\|\|F	C	47\|\|\|G	G	47\|\|\|H	cWW	ntSHa
155	HL_1VW3_034	1VW3	0.3613	0		A	21S ribosomal RNA	U	1773	U	1774	A	1775	A	1776	C	1777	G	1778	cWW	ntSHa
156	HL_4W23_004	4W23	0.3602	0		2	18S ribosomal RNA	U	197	U	198	C	199	G	200	C	201	G	202	cWW	tSHa
157	HL_4W23_012	4W23	0.3198	0		2	18S ribosomal RNA	C	539	U	540	U	541	U	542	C	543	G	544	cWW	ntSHa
158	HL_4R0D_014	4R0D	0.2487	0		A	Group II catalytic intron	U	563	G	564	A	565	A	566	A	567	G	568	cWW	ntSH
159	HL_4K50_003	4K50	0.1838	0		F	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW	ntSH
160	HL_4K50_001	4K50	0.1728	0	GNRA	B	RNA (33-MER)	U	587	G	588	A	589	A	590	A	591	G	592	cWW	ntSH
161	HL_4FNJ_001	4FNJ	0.2084	0		A	RNA (35-MER)	U	16	G	17	A	18	A	19	A	20	G	21	cWW	ntSH
162	HL_4K27_001	4K27	0.2105	0	GNRA	U	Myotonic Dystrophy Type 2 RNA	U	26	G	27	A	28	A	29	A	30	G	31	cWW	ntSH
163	HL_1KXK_001	1KXK	0.2069	0	GNRA	A	ai5g group II Self-splicing intron	U	33	G	34	A	35	A	36	A	37	G	38	cWW	ntSH
164	HL_1FJG_022	1FJG	0.3163	0	GNRA (H)	A	SSU rRNA	U	1012	G	1013	A	1014	A	1015	A	1016	G	1017	cWW	tSH
165	HL_1FJG_007	1FJG	0.2642	0	GNRA (H)	A	SSU rRNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW	ntSH
166	HL_2AW7_007	2AW7	0.2251	0		A	16S ribosomal RNA	U	296	G	297	A	298	G	299	A	300	G	301	cWW	ntSH
167	HL_4R0D_012	4R0D	0.3270	0		A	Group II catalytic intron	U	481	G	482	A	483	A	484	A	485	G	486	cWW	tSH
168	HL_4A1B_013	4A1B	0.2894	0		1	26S RRNA	A	582	G	583	C	584	A	585	A	586	U	587	cWW	ntSH
169	HL_4A1B_018	4A1B	0.2262	0		1	26S RRNA	C	757	G	758	C	759	A	760	A	761	G	762	cWW	ntSH
170	HL_3CUN_001	3CUN	0.2338	0		C	RNA (92-MER)	C	7	G	8	A	9	A	10	A	11	G	12	cWW	ntSH
171	HL_3U5H_017	3U5H	0.2309	0		5	25S rRNA	C	732	G	733	C	734	A	735	A	736	G	737	cWW	ntSH
172	HL_1S72_009	1S72	0.2393	0	GNRA (H)	0	LSU rRNA	C	252	U	253	C	254	A	255	C	256	G	257	cWW	ntSH
173	HL_2IL9_003	2IL9	0.1777	0	GNRA	A	Ribosomal Binding Domain of the IRES RNA	C	6119	G	6119\|\|\|A	A	6119\|\|\|B	A	6119\|\|\|C	A	6119\|\|\|D	G	6119\|\|\|E	ncWW	tSH
174	HL_2EZ6_001	2EZ6	0.1499	0		C	28-MER	C	11	G	12	C	13	A	14	A	15	G	16	cWW	ntSH
175	HL_2EZ6_002	2EZ6	0.1719	0	GNRA	D	28-MER	C	11	G	12	C	13	A	14	A	15	G	16	cWW	ntSH
176	HL_1MZP_001	1MZP	0.1698	0	GNRA	B	fragment of 23S rRNA	C	25	G	26	C	27	A	28	A	29	G	30	cWW	ntSH
177	HL_4QCN_044	4QCN	0.1542	0		A	23S Ribosomal RNA	C	1837	G	1838	U	1839	A	1840	A	1841	G	1842	cWW	ntSH
178	HL_4QK8_001	4QK8	0.1611	0		A	C-di-AMP riboswitch	C	13	G	14	A	15	A	16	A	17	G	18	cWW	ntSH
179	HL_3P22_007	3P22	0.2309	0		G	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW	ntSH
180	HL_3P22_005	3P22	0.2246	0		E	Core ENE hairpin from KSHV PAN RNA	C	17	G	18	A	19	A	20	A	21	G	22	cWW	ntSH
181	HL_4IOA_015	4IOA	0.2707	0	GNRA	X	LSU rRNA	C	498	G	499	G	500	G	501	A	502	G	503	cWW	tSH
182	HL_4QCN_015	4QCN	0.1865	0		A	23S Ribosomal RNA	C	513	G	514	G	515	G	516	A	517	G	518	cWW	ntSH
183	HL_1VW3_055	1VW3	0.1614	0		A	21S ribosomal RNA	C	2925	G	2926	C	2927	A	2928	A	2929	G	2930	cWW	tSH
184	HL_2QBG_066	2QBG	0.2009	0		B	23S rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW	ntSH
185	HL_3KTW_002	3KTW	0.1967	0	GNRA	C	SRP RNA	C	209	G	210	G	211	A	212	A	213	G	214	cWW	ntSH
186	HL_1LNG_002	1LNG	0.1986	0		B	SRP S RNA	C	208	G	209	G	210	A	211	A	212	G	213	cWW	tSH
187	HL_2AW7_004	2AW7	0.1683	0		A	16S ribosomal RNA	C	186	G	187	C	188	A	189	A	190	G	191	cWW	tSH
188	HL_4CUV_066	4CUV	0.1783	0		1	25S RRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW	ntSH
189	HL_1S72_066	1S72	0.1570	0	GNRA (H)	0	LSU rRNA	C	2695	G	2696	A	2697	G	2698	A	2699	G	2700	cWW	ntSH
190	HL_1VX6_065	1VX6	0.1662	0		A	28S ribosomal RNA	C	3411	G	3412	A	3413	G	3414	A	3415	G	3416	cWW	ntSH
191	HL_4A1B_065	4A1B	0.1717	0		1	26S RRNA	C	3014	G	3015	A	3016	G	3017	A	3018	G	3019	cWW	ntSH
192	HL_1VX6_032	1VX6	0.1763	0		A	28S ribosomal RNA	U	1693	G	1694	A	1695	A	1696	A	1697	A	1698	cWW	ntSH
193	HL_2XXA_002	2XXA	0.2318	0		G	SSRP RNA	C	47	G	48	G	49	A	50	A	51	G	52	cWW	ntSH
194	HL_3AM1_003	3AM1	0.1414	0	GNRA	B	ASL-truncated tRNA	C	45	G	46	A	47	G	48	A	49	G	50	cWW	ntSH
195	HL_1S72_072	1S72	0.1633	0	GNRA (H)	9	5S rRNA	C	89	G	90	C	91	G	92	A	93	G	94	cWW	ntSH
196	HL_3DVZ_001	3DVZ	0.1490	0		A	Sarcin/Ricin Domain from E. Coli 23 S rRNA	C	2658	G	2659	A	2660	G	2661	A	2662	G	2663	cWW	ntSH
197	HL_1S72_054	1S72	0.1307	0	GNRA (H)	0	LSU rRNA	C	2248	G	2249	G	2250	G	2251	A	2252	G	2253	cWW	ntSH
198	HL_4W21_065	4W21	0.1993	0		5	28S ribosomal RNA	C	4603	G	4604	A	4605	G	4606	A	4607	G	4608	cWW	tSH
199	HL_2PXV_001	2PXV	0.1844	0		B	4.5 S RNA	C	153	G	154	A	155	A	156	A	157	G	158	cWW	tSH
200	HL_1Q96_001	1Q96	0.1593	0	GNRA	A	sarcin/ricin 28S rRNA	U	13	G	14	A	15	G	16	A	17	A	18	cWW	ntSH
201	HL_3U5H_066	3U5H	0.1470	0		5	25S rRNA	C	3025	G	3026	A	3027	G	3028	A	3029	G	3030	cWW	tSH
202	HL_4IOA_063	4IOA	0.1635	0	GNRA	X	LSU rRNA	C	2637	G	2638	A	2639	G	2640	A	2641	G	2642	cWW	tSH
203	HL_4QCN_062	4QCN	0.1845	0		A	23S Ribosomal RNA	C	2670	G	2671	A	2672	G	2673	A	2674	G	2675	cWW	ntSH
204	HL_4PLX_003	4PLX	0.1364	0		B	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW	ntSH
205	HL_4PLX_001	4PLX	0.1358	0	GNRA	A	Core ENE hairpin and A-rich tract from MALAT1	C	24	G	25	A	26	A	27	A	28	G	29	cWW	ntSH
206	HL_1G1X_001	1G1X	0.1412	0	GNRA	D	16S RIBOSOMAL RNA	C	590	G	591	A	592	A	593	A	594	G	649	cWW	ntSH
207	HL_1S72_023	1S72	0.1293	0	GNRA (H)	0	LSU rRNA	C	804	G	805	A	806	A	807	A	808	G	809	cWW	ntSH
208	HL_2OIU_004	2OIU	0.1482	0		Q	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW	ntSH
209	HL_2OIU_001	2OIU	0.1351	0	GNRA	P	L1 Ribozyme RNA Ligase	C	10	G	11	A	12	A	13	A	14	G	15	cWW	ntSH
210	HL_4TZZ_004	4TZZ	0.1484	0	GNRA (H)	B	tRNA	C	71	G	72	A	73	A	74	A	75	G	76	cWW	ntSH
211	HL_4GMA_004	4GMA	0.1415	0		Z	Adenosylcobalamin riboswitch	C	119	G	120	A	121	A	122	A	123	G	124	cWW	ntSH
212	HL_1RLG_002	1RLG	0.1059	0	GNRA	D	25-MER	C	9	G	10	A	11	A	12	A	13	G	14	cWW	ntSH
213	HL_1HMH_002	1HMH	0.1095	0		C	HAMMERHEAD RIBOZYME-RNA STRAND	C	104	G	21\|\|\|L	A	22\|\|\|L	A	23\|\|\|L	A	24\|\|\|L	G	114	cWW	ntSH
214	HL_3U5H_011	3U5H	0.0880	0		5	25S rRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW	tSH
215	HL_4A1B_011	4A1B	0.0000	0		1	26S RRNA	U	381	G	382	A	383	A	384	A	385	A	386	cWW	ntSH
216	HL_3NVI_001	3NVI	0.1257	0		E	RNA (24-mer)	C	9	G	10	A	11	A	12	A	13	G	14	cWW	ntSH
217	HL_3UCZ_001	3UCZ	0.1278	0		R	RNA (92-MER)	C	31	G	32	A	33	A	34	A	35	G	36	cWW	ntSH
218	HL_3IWN_001	3IWN	0.1281	0	GNRA	A	C-di-GMP riboswitch	C	21	G	22	A	23	A	24	A	25	G	26	cWW	ntSH
219	HL_4ENB_002	4ENB	0.1343	0	GNRA (H)	A	Fluoride riboswitch	U	28	G	29	A	30	A	31	A	32	A	33	cWW	ntSH
220	HL_4TZZ_009	4TZZ	0.1264	0	GNRA (H)	E	tRNA	C	71	G	72	A	73	A	74	A	75	G	76	cWW	ntSH
221	HL_2OIU_006	2OIU	0.1557	0		Q	L1 Ribozyme RNA Ligase	C	59	G	60	A	61	A	62	A	63	G	64	cWW	ntSH
222	HL_3D0U_004	3D0U	0.2248	0	GNRA	A	Lysine Riboswitch RNA	C	142	G	143	A	144	A	145	A	146	G	147	cWW	ntSH
223	HL_1KH6_002	1KH6	0.1499	0	GNRA	A	JIIIabc	C	28	G	29	A	30	A	31	A	32	G	33	cWW	ntSH
224	HL_1FJG_027	1FJG	0.1660	0	GNRA (H)	A	SSU rRNA	C	1165	G	1166	A	1167	A	1168	A	1169	G	1171	cWW	ntSH
225	HL_1HMH_001	1HMH	0.1537	0	GNRA	A	HAMMERHEAD RIBOZYME-RNA STRAND	C	104	G	21\|\|\|L	A	22\|\|\|L	A	23\|\|\|L	A	24\|\|\|L	G	114	cWW	ntSH
226	HL_4JF2_001	4JF2	0.1480	0	GNRA	A	PreQ1-II Riboswitch	C	8	G	9	A	10	A	11	A	12	G	13	cWW	ntSH
227	HL_4FRG_002	4FRG	0.1597	0	GNRA	B	cobalamin riboswitch aptamer domain	C	46	G	47	A	48	A	49	A	50	G	51	cWW	ntSH
228	HL_4BW0_001	4BW0	0.1990	0	GNRA	A	HMKT-7	C	9	G	10	A	11	A	12	A	13	G	14	cWW	ntSH
229	HL_1X8W_005	1X8W	0.2821	0		A	Tetrahymena ribozyme RNA	C	322	G	323	A	324	A	325	A	326	G	327	cWW
230	HL_3U5H_047	3U5H	0.2462	1		5	25S rRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW	ntSH
231	HL_4CUV_047	4CUV	0.2316	1		1	25S RRNA	A	2164	G	2165	A	2166	A	2167	A	2168	U	2170	cWW	ntSH
232	HL_3Q1Q_004	3Q1Q	0.2071	0		B	RNase P RNA	G	135	G	136	A	137	A	138	A	139	C	140	cWW	ntSH
233	HL_2QBZ_001	2QBZ	0.2251	0		X	M-Box RNA, ykoK riboswitch aptamer	C	68	C	69	A	70	A	71	A	72	G	73	cWW	ntSH
234	HL_1VX6_047	1VX6	0.2591	0		A	28S ribosomal RNA	A	2458	C	2459	A	2460	A	2461	C	2462	U	2463	cWW	ntSH
235	HL_4P8Z_003	4P8Z	0.1833	0		A	Lariat capping ribozyme	C	99	U	100	A	101	A	102	C	103	G	104	cWW	ntSH
236	HL_4P9R_004	4P9R	0.1939	0		A	RNA (189-MER)	C	317	U	318	A	319	A	320	C	321	G	322	cWW	ntSH
237	HL_2AW7_019	2AW7	0.1857	0		A	16S ribosomal RNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW	ntSHa
238	HL_1FJG_019	1FJG	0.2333	0	GNRA (H)	A	SSU rRNA	C	862	U	863	A	864	A	865	C	866	G	867	cWW	ntSH
239	HL_3AM1_002	3AM1	0.4687	0	GNRA variation	B	ASL-truncated tRNA	C	32	U	33	U	34	C	35	G	36	G	37	cWW
240	HL_2QBG_028	2QBG	0.3002	2		B	23S rRNA	U	955	G	956	C	957	A	959	A	960	G	962	cWW	ntSH
241	HL_4QCN_026	4QCN	0.2298	2		A	23S Ribosomal RNA	C	1000	G	1001	A	1002	A	1004	A	1005	G	1007	cWW	ntSH
242	HL_1VW3_018	1VW3	0.2685	2		A	21S ribosomal RNA	C	881	G	882	A	883	A	885	A	886	G	888	cWW	ntSH
243	HL_4W21_011	4W21	0.2623	0		5	28S ribosomal RNA	U	393	G	394	A	395	A	396	G	397	A	398	cWW
244	HL_4CUV_017	4CUV	0.3022	0		1	25S RRNA	C	732	G	733	C	734	A	735	A	736	G	737	ncWW	ntSH
245	HL_1Y0Q_007	1Y0Q	0.3173	0		A	Group I catalytic intron	G	204	G	205	A	206	A	207	A	208	C	209	cWW	tSH
246	HL_1UN6_004	1UN6	0.1899	0	GNRA	F	5S RIBOSOMAL RNA	G	82	G	83	A	84	A	85	A	86	C	94	cWW	ntSH
247	HL_4UN3_003	4UN3	0.1998	0		A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
248	HL_4R0D_009	4R0D	0.2515	0		A	Group II catalytic intron	A	390	G	391	C	392	A	393	A	394	U	395	cWW	ntSH
249	HL_4OO8_001	4OO8	0.2381	0		B	RNA (97-MER)	A	32	G	33	A	34	A	35	A	36	U	37	cWW
250	HL_1S72_045	1S72	0.2327	1	GNRA (H)	0	LSU rRNA	C	1793	G	1794	G	1795	A	1796	A	1797	G	1799	cWW
251	HL_1VW3_049	1VW3	0.1563	0		A	21S ribosomal RNA	C	2641	G	2642	U	2643	A	2644	A	2645	G	2646	cWW	ntSH
252	HL_1FJG_010	1FJG	0.1557	0	GNRA (H)	A	SSU rRNA	C	379	G	380	C	381	A	382	A	383	G	384	cWW
253	HL_4QCN_056	4QCN	0.1508	0		A	23S Ribosomal RNA	C	2386	G	2387	A	2388	A	2389	A	2390	G	2391	cWW	ntSH
254	HL_4CUV_011	4CUV	0.1211	0		1	25S RRNA	U	382	G	383	A	384	A	385	A	386	A	387	cWW	ntSH
255	HL_4A1B_059	4A1B	0.1787	0		1	26S RRNA	C	2733	G	2734	A	2735	A	2736	A	2737	G	2738	cWW
256	HL_3U5H_013	3U5H	0.1769	0		5	25S rRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW	ntSH
257	HL_4CUV_013	4CUV	0.2329	0		1	25S RRNA	C	599	G	600	U	601	A	602	A	603	G	604	cWW
258	HL_4CUV_023	4CUV	0.2644	1		1	25S RRNA	C	1023	G	1024	A	1025	A	1026	A	1027	G	1029	cWW
259	HL_3J7A_002	3J7A	0.2829	1		A	SSU rRNA	G	152	A	153	A	154	A	155	A	156	C	158	cWW	ntSH
260	HL_2QBG_071	2QBG	0.2720	0		B	23S rRNA	A	2856	G	2857	C	2858	G	2859	A	2860	U	2861	cWW	tSH
261	HL_4W23_026	4W23	0.3198	0		2	18S ribosomal RNA	A	1353	G	1354	C	1355	G	1356	A	1357	U	1358	cWW
262	HL_4QCN_019	4QCN	0.2386	0		A	23S Ribosomal RNA	G	654	G	655	A	656	A	657	A	658	C	659	cWW
263	HL_4IOA_057	4IOA	0.3289	0	GNRA	X	LSU rRNA	G	2353	G	2354	A	2355	A	2356	A	2357	C	2358	cWW
264	HL_1U9S_002	1U9S	0.2702	0	GNRA	A	RIBONUCLEASE P	G	99	G	100	U	101	A	102	A	103	C	104	cWW	ntSH
265	HL_1U9S_004	1U9S	0.2391	0	GNRA	A	RIBONUCLEASE P	G	204	G	205	C	206	A	207	A	208	C	209	cWW	ntSH
266	HL_2QBG_021	2QBG	0.2338	0		B	23S rRNA	G	629	G	630	A	631	A	632	A	633	C	634	cWW	tSH
267	HL_4UN5_001	4UN5	0.3064	0		A	tracrRNA	A	32	G	33	A	34	A	35	A	36	U	37	cWW
268	HL_4CUX_025	4CUX	0.2509	0		2	18S RRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW
269	HL_3J7A_021	3J7A	0.2408	0	GNRA (H)	A	SSU rRNA	A	1185	G	1186	A	1187	A	1188	A	1189	U	1190	cWW
270	HL_4BPP_024	4BPP	0.2073	0		A	18S RRNA	A	1056	G	1057	A	1058	A	1059	A	1060	U	1061	cWW	ntSH
271	HL_3U5F_025	3U5F	0.2144	0		6	18S rRNA	A	1084	G	1085	A	1086	A	1087	A	1088	U	1089	cWW
272	HL_3U5H_048	3U5H	0.2538	0		5	25S rRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW
273	HL_4CUV_048	4CUV	0.2276	0		1	25S RRNA	A	2220	G	2221	A	2222	A	2223	A	2224	U	2225	cWW
274	HL_1Y0Q_001	1Y0Q	0.3232	0		A	Group I catalytic intron	A	21	G	22	U	23	A	24	A	25	U	26	cWW	ntSH
275	HL_4W21_048	4W21	0.4218	0		5	28S ribosomal RNA	A	3724	G	3725	A	3726	A	3727	A	3728	U	3729	cWW
276	HL_4A1B_020	4A1B	0.2588	0		1	26S RRNA	G	869	G	870	A	871	A	872	A	873	C	874	cWW	ntSH
277	HL_1X8W_001	1X8W	0.2621	0		A	Tetrahymena ribozyme RNA	G	149	G	150	A	151	A	152	A	153	C	154	cWW
278	HL_1S72_040	1S72	0.2587	0	GNRA (H)	0	LSU rRNA	G	1628	G	1629	A	1630	A	1631	A	1632	C	1633	cWW	ntSH
279	HL_1FJG_003	1FJG	0.2569	0	GNRA (H)	A	SSU rRNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW	ntSH
280	HL_4W21_019	4W21	0.3554	0		5	28S ribosomal RNA	G	1561	G	1562	A	1563	A	1564	A	1565	C	1566	cWW	ntSH
281	HL_4B5R_002	4B5R	0.2042	0	GNRA (H)	A	SAM-I riboswitch	A	49	G	50	A	51	A	52	A	53	U	54	cWW
282	HL_4W21_072	4W21	0.2485	0		7	5S ribosomal RNA	G	86	G	87	A	88	G	89	A	90	C	91	cWW	ntSH
283	HL_4L81_001	4L81	0.2621	0		A	SAM-I/IV variant riboswitch aptamer domain	G	13	G	14	A	15	G	16	A	17	C	18	cWW	ntSH
284	HL_1S72_020	1S72	0.2563	0	GNRA (H)	0	LSU rRNA	G	690	G	691	A	692	A	693	A	694	C	695	cWW	ntSH
285	HL_3IAB_001	3IAB	0.2842	0		R	P3 domain of the RNA component of RNase MRP	G	78	G	79	A	80	A	81	A	82	C	83	cWW	ntSH
286	HL_4A1C_006	4A1C	0.2293	0		3	5S RRNA	G	86	G	87	G	88	G	89	A	90	C	91	cWW	ntSH
287	HL_3E5C_001	3E5C	0.2605	0	GNRA	A	SMK box (SAM-III) Riboswitch	G	18	G	19	A	20	A	21	A	22	C	23	cWW	tSH
288	HL_1S72_070	1S72	0.2701	0	GNRA (H)	0	LSU rRNA	G	2876	G	2877	U	2878	A	2879	A	2880	C	2881	cWW	ntSH
289	HL_4CUV_074	4CUV	0.2893	0		3	5S RRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW	ntSH
290	HL_1VX6_071	1VX6	0.2699	0		B	5S ribosomal RNA	G	86	G	87	A	88	G	89	A	90	C	91	cWW	ntSH
291	HL_1MFQ_002	1MFQ	0.2715	0	GNRA	A	SRP RNA	G	197	G	198	A	199	A	200	A	201	C	202	cWW	tSH
292	HL_3U5H_074	3U5H	0.2439	0		7	5S rRNA	G	88	G	89	U	90	G	91	A	92	C	93	cWW	ntSH
293	HL_4R0D_008	4R0D	0.3631	0		A	Group II catalytic intron	G	369	G	370	A	371	A	372	A	373	C	374	cWW	tSH
294	HL_2AW7_003	2AW7	0.2860	0		A	16S ribosomal RNA	G	158	G	159	A	160	A	161	A	162	C	163	cWW	ntSH
295	HL_3RW6_001	3RW6	0.2823	0	GNRA	H	constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA	G	27	G	28	A	29	A	30	A	31	C	32	cWW	tSH
296	HL_3U5H_019	3U5H	0.2336	0		5	25S rRNA	G	844	G	845	A	846	A	847	A	848	C	849	cWW	tSH
297	HL_3MOJ_001	3MOJ	0.2620	0	GNRA	A	LSU rRNA	G	2529	G	2530	A	2531	A	2532	A	2533	C	2534	cWW	ntSH
298	HL_2OIU_002	2OIU	0.1722	0		P	L1 Ribozyme RNA Ligase	C	28	G	29	A	30	A	31	A	32	G	33	cWW	ntSH
299	HL_1VX6_011	1VX6	0.2279	0		A	28S ribosomal RNA	A	391	G	392	G	393	A	394	A	395	U	396	cWW	ntSH
300	HL_4B5R_003	4B5R	0.2134	0	GNRA (H)	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW	ntSH
301	HL_4L81_003	4L81	0.2105	0		A	SAM-I/IV variant riboswitch aptamer domain	G	57	G	58	A	59	G	60	A	61	C	62	cWW	ntSH
302	HL_3GX5_002	3GX5	0.1635	0		A	RNA (94-MER)	A	49	G	50	A	51	A	52	A	53	U	54	cWW	ntSH
303	HL_4AOB_002	4AOB	0.2110	0	GNRA	A	SAM-I riboswitch	A	49	A	50	A	51	A	52	A	53	U	54	cWW	tSH
304	HL_4FAW_006	4FAW	0.2301	0		A	Group II catalytic intron D1-D4-3	G	274	G	275	A	276	A	277	A	278	C	279	cWW	ntSH
305	HL_3GX5_003	3GX5	0.2370	0		A	RNA (94-MER)	G	73	G	74	A	75	A	76	A	77	C	78	cWW	ntSH
306	HL_4AOB_003	4AOB	0.2155	0	GNRA	A	SAM-I riboswitch	G	73	G	74	A	75	A	76	A	77	C	78	cWW	ntSH
307	HL_1GID_004	1GID	0.2410	0	GNRA	B	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW	ntSH
308	HL_1GID_001	1GID	0.2439	0		A	P4-P6 RNA RIBOZYME DOMAIN	G	149	G	150	A	151	A	152	A	153	C	154	cWW	ntSH
309	HL_1U6B_001	1U6B	0.2389	0	GNRA	B	197-MER	G	23	G	24	A	25	A	26	A	27	C	28	cWW	ntSH
310	HL_3V7E_006	3V7E	0.2217	0	GNRA (H)	D	SAM-I riboswitch	G	305	G	306	A	307	A	308	A	309	C	310	cWW	ntSH
311	HL_1NBS_007	1NBS	0.2685	0	GNRA	B	RNase P class B	A	204	G	205	A	206	A	207	A	208	U	209	cWW	ntSH
312	HL_3T4B_001	3T4B	0.2471	0		A	HCV IRES pseudoknot domain plus crystallization module	G	9	G	10	A	11	A	12	A	13	C	14	cWW	ntSH
313	HL_4UN5_003	4UN5	0.2205	0		A	tracrRNA	U	72	G	73	A	74	A	75	A	76	A	77	cWW	ntSH
314	HL_4IOA_005	4IOA	0.3619	0	GNRA	X	LSU rRNA	C	146	G	147	C	148	A	149	A	150	G	151	cWW
315	HL_2AW7_022	2AW7	0.2297	0		A	16S ribosomal RNA	A	1012	G	1013	A	1014	G	1015	A	1016	U	1017	cWW
316	HL_4W23_022	4W23	0.2435	0		2	18S ribosomal RNA	G	1141	G	1142	A	1143	A	1144	A	1145	C	1146	cWW
317	HL_4W23_028	4W23	0.3792	0		2	18S ribosomal RNA	A	1421	G	1422	C	1423	G	1424	G	1425	U	1426
318	HL_4W21_012	4W21	0.3385	0		5	28S ribosomal RNA	G	1178	U	1179	C	1180	C	1181	C	1182	C	1183	ncWW	ntSHa
319	HL_4R0D_005	4R0D	0.2509	0		A	Group II catalytic intron	C	173	G	174	A	175	A	176	A	177	G	178	cWW	ntSH
320	HL_1VX6_025	1VX6	0.3129	1		A	28S ribosomal RNA	G	1254	G	1255	U	1256	A	1257	A	1258	C	1260	cWW	ntSH
321	HL_4CUV_025	4CUV	0.3050	1		1	25S RRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW	ntSH
322	HL_3U5H_025	3U5H	0.3005	1		5	25S rRNA	G	1126	G	1127	U	1128	A	1129	A	1130	C	1132	cWW	ntSH
323	HL_1S72_028	1S72	0.2256	1	GNRA (H)	0	LSU rRNA	G	1054	G	1055	U	1056	A	1057	A	1058	C	1060	cWW	ntSH
324	HL_4IOA_026	4IOA	0.2758	2	GNRA	X	LSU rRNA	A	966	G	967	C	968	A	970	A	971	U	973	cWW	ntSH
325	HL_4A1B_026	4A1B	0.3346	1		1	26S RRNA	G	1153	G	1154	U	1155	A	1156	A	1157	C	1159	cWW
326	HL_1S72_036	1S72	0.4795	1	GNRA (H)	0	LSU rRNA	G	1468	C	1469	A	1470	A	1471	C	1472	C	1474	cWW	tSHa
327	HL_1X8W_003	1X8W	0.3855	0		A	Tetrahymena ribozyme RNA	G	234	G	235	A	236	G	237	A	238	C	240	cWW
328	HL_2OIU_005	2OIU	0.4198	0		Q	L1 Ribozyme RNA Ligase	C	28	G	29	A	30	A	31	A	32	G	33	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAAG	56
GGAAAC	32
CGCAAG	22
CGUGAG	16
CGAGAG	15
UGAAAG	14
AGAAAU	12
CGUAAG	11
UGAAAA	10
GGUAAC	9
CGGAAG	6
CAGCCG	6
GGUGAC	5
CGCGAG	5
GUGAAC	5
GGAGAC	5
GGUAAGC	5
AGUGAU	4
CUAACG	4
GGCAAC	3
GGCGAC	3
UGUGAA	3
AGCAAU	3
AGUAAU	3
CGAAGG	3
CGGGAG	3
GAAGCU	2
GGGAGC	2
UGAGAA	2
UGCAAG	2
AGAGAU	2
GUAAUUC	2
UGAGAG	2
AGAAAGU	2
AGCGAU	2
GGUUCC	1
UGUGAG	1
CGCGGG	1
UGCAAA	1
UGGGAA	1
UGCGAA	1
CGAGUG	1
UGACGG	1
CGCAGG	1
CGUAGG	1
CGAUAG	1
CUGAAG	1
CGAGCG	1
CAAACG	1
CUAAUUG	1
UUAAUG	1
CGGCAG	1
ACACCU	1
ACCUUU	1
UUAGGG	1
UCAACA	1
GGGAAC	1
CGAACG	1
AUAAAU	1
UUAGAG	1
UUAGCG	1
UUAACG	1
UUCGCG	1
CUUUCG	1
CUCACG	1
CCAAAG	1
ACAACU	1
CUUCGG	1
UGCUAACG	1
CGAUAACG	1
CGAUAAGG	1
UGAAGA	1
CGGAACG	1
CGAAAUG	1
GAAAAGC	1
GGGGAC	1
AGGAAU	1
AAAAAU	1
AGCGGU	1
GUCCCC	1
AGCUAACU	1
GCAACUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAAA	124
GCAA	31
GUGA	29
GAGA	26
GUAA	23
GCGA	11
GGAA	8
UGAA	6
AGCC	6
GGGA	5
UAAC	5
GUAAG	5
GAAG	4
UAAUU	3
AAGC	2
GGAG	2
GCGG	2
CAAC	2
GAAAG	2
GCUAAC	2
GUUC	1
GAGU	1
GACG	1
GCAG	1
GUAG	1
GAUA	1
GAGC	1
AAAC	1
UAAU	1
GGCA	1
CACC	1
CCUU	1
UAGG	1
GAAC	1
UAAA	1
UAGA	1
UAGC	1
UCGC	1
UUUC	1
UCAC	1
CAAA	1
UUCG	1
GAUAAC	1
GAUAAG	1
GGAAC	1
GAAAU	1
AAAAG	1
AAAA	1
UCCC	1
CAACU	1

Release history

Release	1.18
Date	2014-10-09
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_67042.17	Only in the parent motif
HL_67042.16 Compare	HL_2OIU_002, HL_4A1B_017, HL_2OIU_001, HL_2OIU_006, HL_4A1B_013, HL_2OIU_004, HL_4A1B_011, HL_4CUV_013, HL_3J7A_013, HL_1M5O_004, HL_2Y9B_002, HL_4A1B_018, HL_1VW3_049, HL_1KH6_002, HL_488D_002, HL_4A1C_006, HL_4CUV_030, HL_1VX6_071, HL_4QCN_026, HL_4B5R_002, HL_4B5R_003, HL_4ENB_002, HL_2XXA_002, HL_4A1B_010, HL_3IWN_001, HL_1S72_054, HL_4K27_001, HL_2OIU_005, HL_4FAW_003, HL_4CUV_025, HL_4QK9_002, HL_4IOA_068, HL_4CUX_037, HL_4CUV_023, HL_4IOA_062, HL_4IOA_063, HL_2AW7_022, HL_3U5H_033, HL_3NPN_001, HL_3J7A_007, HL_3CUN_001, HL_3J7A_002, HL_3W3S_003, HL_3U5H_047, HL_2OIU_003, HL_2Y9B_001, HL_4A1B_065, HL_1KXK_001, HL_1FJG_007, HL_1HMH_001, HL_1VX6_065, HL_3U5H_048, HL_1HMH_002, HL_2QBG_021, HL_1S72_040, HL_2AW7_003, HL_4BPP_015, HL_3KTW_002, HL_1S72_045, HL_2QBG_028, HL_1S72_048, HL_4CUV_036, HL_3IAB_001, HL_1FJG_022, HL_2AW7_019, HL_1FJG_020, HL_1FJG_027, HL_4KQY_002, HL_4CUV_033, HL_2AW7_013, HL_4QCN_033, HL_4IOA_015, HL_1FJG_028, HL_2AW7_016, HL_1Q96_001, HL_1MFQ_001, HL_1MFQ_002, HL_3NKB_002, HL_1FJG_019, HL_3U5H_013, HL_1VX6_059, HL_1VW3_027, HL_4PLX_001, HL_1VW3_055, HL_4PLX_003, HL_3SUX_002, HL_1U9S_002, HL_2QBG_036, HL_4BPP_024, HL_3U5H_030, HL_1S72_033, HL_2QBG_033, HL_4CUV_048, HL_4CUV_047, HL_4CUX_025, HL_3U5H_039, HL_4BPP_028, HL_3U5F_029, HL_3NVI_001, HL_1FJG_032, HL_2QBG_066, HL_1S72_017, HL_3MOJ_001, HL_2EZ6_002, HL_4IOA_005, HL_4QCN_045, HL_4QCN_044, HL_2AW7_004, HL_3AM1_002, HL_2AW7_007, HL_4BPP_003, HL_3UCZ_001, HL_2EZ6_001, HL_4CUV_060, HL_4QCN_015, HL_4BW0_001, HL_1FJG_024, HL_3GX5_002, HL_2ZZM_003, HL_4A1B_046, HL_1VX6_047, HL_4BPP_032, HL_3U5H_011, HL_4BPP_036, HL_1VW3_018, HL_3U5H_010, HL_4P8Z_003, HL_2BTE_003, HL_1S72_020, HL_3U5H_025, HL_4P8Z_005, HL_3GX5_003, HL_3E5C_001, HL_4JF2_001, HL_1Q96_003, HL_4P9R_004, HL_4IOA_030, HL_4IOA_033, HL_2QBZ_001, HL_1FJG_003, HL_4FAW_006, HL_4QK8_001, HL_4QCN_056, HL_2BTE_007, HL_2QBG_016, HL_3T4B_001, HL_2AW7_032, HL_488D_001, HL_1VW3_009, HL_4IOA_057, HL_4AOB_003, HL_4AOB_002, HL_4FNJ_001, HL_4PQV_001, HL_1VX6_035, HL_4QCN_030, HL_3ADC_003, HL_1JID_001, HL_3U5H_065, HL_1S72_015, HL_1S72_028, HL_4IOA_070, HL_3RG5_003, HL_3U5H_017, HL_3U5H_016, HL_4CUV_065, HL_2HO7_004, HL_3U5F_015, HL_4CUV_066, HL_1FJG_013, HL_1FJG_010, HL_1UN6_004, HL_3RW6_001, HL_1LNG_002, HL_4QCN_061, HL_4IOA_026, HL_1Y0Q_007, HL_1Y0Q_004, HL_4QCN_062, HL_1Y0Q_003, HL_4QCN_067, HL_1Y0Q_001, HL_4QCN_069, HL_2QBG_059, HL_2AW7_028, HL_3U5F_025, HL_4QCN_019, HL_4L81_001, HL_1GID_004, HL_4L81_003, HL_4L81_004, HL_2AW7_024, HL_4A1B_029, HL_3U5H_019, HL_4A1B_026, HL_1VW3_034, HL_1U6B_004, HL_1U6B_001, HL_4A1B_020, HL_4BPP_009, HL_4UN3_003, HL_3AM1_003, HL_2PXV_001, HL_2NZ4_012, HL_3DVZ_001, HL_1VX6_029, HL_4GMA_004, HL_4CUV_074, HL_3U5F_003, HL_2IL9_003, HL_1S72_070, HL_1S72_009, HL_1S72_023, HL_4C7O_001, HL_2QBG_065, HL_4CUX_026, HL_4UN5_001, HL_3Q1Q_008, HL_4CUX_022, HL_3Q1Q_003, HL_3Q1Q_001, HL_1X8W_001, HL_3Q1Q_006, HL_1X8W_003, HL_3Q1Q_004, HL_1VX6_010, HL_3J7A_019, HL_4QCN_014, HL_3P22_005, HL_3P22_007, HL_1VX6_011, HL_4A1B_035, HL_2NZ4_016, HL_1VX6_017, HL_1RLG_002, HL_3V7E_006, HL_4UN5_003, HL_3J7A_034, HL_3J7A_030, HL_4K50_001, HL_4OO8_001, HL_4K50_003, HL_3E5C_002, HL_1MZP_001, HL_2QBG_071, HL_4IOA_014, HL_1X8W_005, HL_3U5F_037, HL_3U5H_074, HL_4IOA_046, HL_3U5F_033, HL_4A1B_059, HL_1S72_072, HL_1GID_001, HL_2AW7_020, HL_4P9R_006, HL_1NBS_007, HL_4CUV_011, HL_4FRG_002, HL_4CUX_033, HL_3U5F_026, HL_4OO8_003, HL_4LVZ_002, HL_4BPP_025, HL_1U9S_004, HL_1VX6_032, HL_1VW3_054, HL_1S72_036, HL_3D0U_004, HL_4IOA_019, HL_1G1X_001, HL_1FJG_016, HL_3J7A_021, HL_3J7A_022, HL_4CUV_019, HL_3U5F_022, HL_4BPP_021, HL_3U5H_066, HL_3U5H_060, HL_2QBG_049, HL_3U5H_036, HL_1VX6_064, HL_2QBG_048, HL_4CUX_015, HL_1VX6_025, HL_1S72_060, HL_4QK9_001, HL_4CUX_003, HL_1S72_065, HL_1S72_066, HL_2QBG_060, HL_4CUV_010, HL_1G1X_003, HL_2AW7_010, HL_4CUV_016, HL_4CUV_017, HL_1VX6_020, HL_4A1B_064	HL_4W23_028, HL_4W23_026, HL_4W23_023, HL_4W23_022, HL_4R0D_014, HL_4R0D_015, HL_4W21_019, HL_4R0D_012, HL_4W21_012, HL_4W21_010, HL_4W21_011, HL_4W21_072, HL_4W21_059, HL_4W21_030, HL_4W21_033, HL_4W21_037, HL_4W23_030, HL_4W23_034, HL_4W23_012, HL_4W23_004, HL_4TZZ_009, HL_4W21_040, HL_4R0D_005, HL_4R0D_003, HL_4W21_048, HL_4W21_065, HL_4W21_064, HL_4TZZ_004, HL_4R0D_009, HL_4R0D_008	HL_1VWW_019, HL_4LCK_004, HL_1VWW_011, HL_1VWW_010, HL_1VWW_012, HL_1VWW_037, HL_1VWW_033, HL_1VWW_030, HL_1VWW_072, HL_1VX2_008, HL_1VX2_004, HL_1VX2_022, HL_1VX2_023, HL_1VX2_025, HL_1VX2_027, HL_1VX2_029, HL_1VWW_040, HL_1VWW_048, HL_1VWW_064, HL_1VWW_065, HL_1VX2_033, HL_1VX2_014, HL_1VX2_012

Children motifs

This motif has no children motifs.

Annotations: (223)
GNRA (56)
GNRA (H) (41)
GNRA variation (6)
GNRA variation (H) (2)
Basepair signature: cWW-tSH-R-R
Heat map statistics: Min 0.01 | Avg 0.41 | Max 0.96

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view

reading 218 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

2 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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218 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

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Coloring options: Nucleotide numbers

Motif HL_67042.17 Version HL_67042.17 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_67042.17 Version HL_67042.17 of this group appears in releases 1.18 to 1.18

Download

Csv

Json