3D structure

PDB id
4A1B (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
GGGAACGGGC
Length
10 nucleotides
Bulged bases
4A1B|1|1|A|2367, 4A1B|1|1|A|2368, 4A1B|1|1|C|2369
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_18156.7
Basepair signature
cWW-R-R-tWH-R
Number of instances in this motif group
10

Unit IDs

4A1B|1|1|G|2364
4A1B|1|1|G|2365
4A1B|1|1|G|2366
4A1B|1|1|A|2367
4A1B|1|1|A|2368
4A1B|1|1|C|2369
4A1B|1|1|G|2370
4A1B|1|1|G|2371
4A1B|1|1|G|2372
4A1B|1|1|C|2373

Current chains

Chain 1
26S RRNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3044 s
Application loaded.