4A1B Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_4A1B_001 | 1/1/36:43 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
HL_4A1B_002 | 1/1/67:72 | No text annotation | geometric HL_5TBW_002 NA | |
HL_4A1B_003 | 1/1/88:94 | No text annotation | geometric HL_5TBW_003 NA | |
HL_4A1B_004 | 1/1/130:136 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
HL_4A1B_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_005 NA | |
HL_4A1B_006 | 1/1/208:212 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
HL_4A1B_007 | 1/1/216:224 | T-loop with unstacked turn | geometric HL_4V9F_012 HL_27670.2 | |
HL_4A1B_008 | 1/1/277:286 | T-loop related | geometric HL_8P9A_120 HL_77436.5 | |
HL_4A1B_009 | 1/1/302:311 | Pseudoknot geometry | geometric HL_5TBW_009 NA | |
HL_4A1B_010 | 1/1/356:361 | GNRA | geometric HL_7RQB_063 NA | |
HL_4A1B_011 | 1/1/381:386 | GNRA | geometric HL_5TBW_011 NA | |
HL_4A1B_012 | 1/1/486:493 | GNRA wlth tandem sheared | geometric HL_5J7L_154 HL_81538.2 | |
HL_4A1B_013 | 1/1/582:587 | GNRA | geometric HL_5TBW_017 NA | |
HL_4A1B_015 | 1/1/664:673 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_014 NA | |
HL_4A1B_017 | 1/1/732:737 | GNRA | geometric HL_6DME_001 HL_37824.7 | |
HL_4A1B_018 | 1/1/757:762 | GNRA | geometric HL_7A0S_063 HL_37824.7 | |
HL_4A1B_019 | 1/1/788:792 | Mini UNCG | geometric HL_5J7L_204 HL_48778.2 | |
HL_4A1B_020 | 1/1/869:874 | GNRA | geometric HL_6SVS_001 HL_37824.7 | |
HL_4A1B_021 | 1/1/901:910 | No text annotation | geometric HL_5TBW_020 NA | |
HL_4A1B_022 | 1/1/935:943 | No text annotation | geometric HL_8P9A_133 HL_87553.1 | |
HL_4A1B_023 | 1/1/983:988 | No text annotation | geometric HL_8CRE_021 HL_70782.2 | |
HL_4A1B_024 | 1/1/1050:1054 | No text annotation | ||
HL_4A1B_025 | 1/1/1104:1111 | No text annotation | geometric HL_5TBW_024 NA | |
HL_4A1B_026 | 1/1/1153:1159 | GNRA | geometric HL_5TBW_025 NA | |
HL_4A1B_027 | 1/1/1175:1182 | No text annotation | geometric HL_5TBW_026 NA | |
HL_4A1B_028 | 1/1/1374:1384 | No text annotation | ||
HL_4A1B_029 | 1/1/1429:1434 | GNRA | geometric HL_5TBW_036 NA | |
HL_4A1B_030 | 1/1/1488:1496 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_031 NA | |
HL_4A1B_031 | 1/1/1532:1538 | Pseudoknot geometry with 3' bulge | geometric HL_5TBW_032 NA | |
HL_4A1B_032 | 1/1/1569:1576 | GNRA with extra cWW | geometric HL_7A0S_056 HL_04259.3 | |
HL_4A1B_034 | 1/1/1624:1633 | No text annotation | geometric HL_4V9F_037 HL_81545.2 | |
HL_4A1B_035 | 1/1/1658:1663 | GNRA | geometric HL_5TBW_036 NA | |
HL_4A1B_036 | 1/1/1704:1712 | No text annotation | geometric HL_5TBW_037 NA | |
HL_4A1B_037 | 1/1/1743:1749 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_4A1B_039 | 1/1/1818:1822 | Mini UNCG | geometric HL_5J7L_172 HL_48778.2 | |
HL_4A1B_040 | 1/1/1868:1875 | No text annotation | geometric HL_5TBW_041 NA | |
HL_4A1B_041 | 1/1/1886:1892 | GNRA | geometric HL_5TBW_042 NA | |
HL_4A1B_042 | 1/1/1947:1952 | UNCG | geometric HL_5TBW_043 NA | |
HL_4A1B_044 | 1/1/2106:2110 | No text annotation | geometric HL_6FQ3_001 HL_22135.1 | |
HL_4A1B_045 | 1/1/2131:2141 | No text annotation | geometric HL_4WF9_043 HL_01962.2 | |
HL_4A1B_046 | 1/1/2160:2165 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_4A1B_047 | 1/1/2214:2221 | No text annotation | geometric HL_6CF2_001 HL_87553.1 | |
HL_4A1B_048 | 1/1/2249:2257 | No text annotation | ||
HL_4A1B_049 | 1/1/2287:2295 | No text annotation | geometric HL_5TBW_050 NA | |
HL_4A1B_050 | 1/1/2364:2373 | No text annotation | geometric HL_5TBW_051 NA | |
HL_4A1B_052 | 1/1/2531:2536 | GNRA | geometric HL_6ASO_001 HL_37824.7 | |
HL_4A1B_053 | 1/1/2558:2561 | No text annotation | ||
HL_4A1B_054 | 1/1/2605:2613 | No text annotation | geometric HL_4V9F_055 HL_85367.2 | |
HL_4A1B_055 | 1/1/2622:2634 | No text annotation | geometric HL_5TBW_055 NA | |
HL_4A1B_056 | 1/1/2662:2670 | No text annotation | geometric HL_5TBW_056 NA | |
HL_4A1B_057 | 1/1/2682:2689 | Pseudoknot geometry | geometric HL_5TBW_057 NA | |
HL_4A1B_059 | 1/1/2733:2738 | GNRA | geometric HL_5J7L_152 HL_37824.7 | |
HL_4A1B_060 | 1/1/2764:2772 | Pseudoknot geometry | geometric HL_5TBW_060 NA | |
HL_4A1B_061 | 1/1/2828:2836 | No text annotation | geometric HL_5J7L_193 HL_32735.2 | |
HL_4A1B_062 | 1/1/2885:2892 | No text annotation | geometric HL_5TBW_062 NA | |
HL_4A1B_063 | 1/1/2908:2914 | No text annotation | geometric HL_5TBW_063 NA | |
HL_4A1B_064 | 1/1/2951:2956 | GNRA | geometric HL_7A0S_062 HL_37824.7 | |
HL_4A1B_065 | 1/1/3014:3019 | GNRA | geometric HL_5B2T_003 HL_37824.7 | |
HL_4A1B_066 | 1/1/3057:3062 | Ribsomal LSU H95 | geometric HL_5TBW_066 NA | |
HL_4A1B_067 | 1/1/3099:3113 | No text annotation | geometric HL_4V9F_068 HL_74055.2 | |
HL_4A1B_068 | 1/1/3161:3178 | Mini UNCG | geometric HL_4OOG_001 HL_56334.1 | |
HL_4A1B_069 | 1/1/3202:3209 | UNCG | geometric HL_4LGT_001 HL_34617.5 | |
HL_4A1B_070 | 1/1/3263:3271 | No text annotation | geometric HL_5TBW_070 NA | |
HL_4A1B_071 | 1/1/3306:3313 | No text annotation | geometric HL_6UFM_001 HL_04642.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_4A1B_014 | UNCG | ||
HL_4A1B_016 | No text annotation | ||
HL_4A1B_033 | No text annotation | ||
HL_4A1B_038 | No text annotation | ||
HL_4A1B_043 | No text annotation | ||
HL_4A1B_051 | No text annotation | ||
HL_4A1B_058 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_4A1B_001 | 1/1/25:26, 1/1/54:56 | Single stack bend | geometric IL_5TBW_004 NA | |
IL_4A1B_002 | 1/1/29:36, 1/1/43:51 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
IL_4A1B_003 | 1/1/80:87, 1/1/95:101 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4WF9_009 IL_04346.10 | |
IL_4A1B_004 | 1/1/121:122, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
IL_4A1B_005 | 1/1/125:128, 1/1/138:141 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
IL_4A1B_006 | 1/1/158:159, 1/1/260:262 | Single bulged U | geometric IL_5J7L_334 IL_89505.4 | |
IL_4A1B_007 | 1/1/162:165, 1/1/254:257 | Double sheared | geometric IL_3D0U_002 IL_09705.15 | |
IL_4A1B_008 | 1/1/167:171, 1/1/248:252 | No text annotation | ||
IL_4A1B_009 | 1/1/173:175, 1/1/245:246 | Single stack bend | geometric IL_5TBW_004 NA | |
IL_4A1B_010 | 1/1/177:178, 1/1/240:243 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
IL_4A1B_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | geometric IL_4V9F_013 IL_89505.4 | |
IL_4A1B_012 | 1/1/375:378, 1/1/389:400 | No text annotation | geometric IL_4WF9_015 IL_81516.2 | |
IL_4A1B_013 | 1/1/422:424, 1/1/656:658 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_87907.2 | |
IL_4A1B_015 | 1/1/443:445, 1/1/532:534 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
IL_4A1B_016 | 1/1/449:455, 1/1/523:528 | No text annotation | ||
IL_4A1B_017 | 1/1/457:462, 1/1/516:521 | No text annotation | ||
IL_4A1B_018 | 1/1/466:468, 1/1/511:512 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
IL_4A1B_019 | 1/1/469:470, 1/1/507:510 | Major groove minor groove platform; mini C-loop | geometric IL_1I6U_002 IL_68140.4 | |
IL_4A1B_020 | 1/1/470:472, 1/1/506:507 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_4A1B_021 | 1/1/473:474, 1/1/503:505 | Major groove platform | geometric IL_4WF9_078 IL_48076.6 | |
IL_4A1B_022 | 1/1/475:479, 1/1/499:502 | UAA/GAN variation | geometric IL_2R8S_002 IL_77691.5 | |
IL_4A1B_023 | 1/1/484:486, 1/1/493:494 | Single bulged A | geometric IL_6WPI_001 IL_31462.6 | |
IL_4A1B_024 | 1/1/555:557, 1/1/610:612 | Isolated cWS basepair | geometric IL_4WF9_034 NA | |
IL_4A1B_025 | 1/1/562:569, 1/1/600:605 | No text annotation | ||
IL_4A1B_026 | 1/1/571:574, 1/1/594:598 | UAA/GAN related | geometric IL_3IGI_009 IL_77691.5 | |
IL_4A1B_027 | 1/1/577:580, 1/1/589:591 | Isolated non-canonical cWW pair | geometric IL_4K31_003 IL_57744.1 | |
IL_4A1B_028 | 1/1/689:691, 1/1/820:822 | Isolated non-canonical cWW pair | geometric IL_1UN6_005 IL_87907.2 | |
IL_4A1B_029 | 1/1/704:708, 1/1/721:725 | No text annotation | ||
IL_4A1B_030 | 1/1/751:755, 1/1/764:769 | Triple sheared related | geometric IL_5J7L_063 IL_80231.1 | |
IL_4A1B_031 | 1/1/776:777, 1/1/804:806 | Single bulged A | geometric IL_5TBW_024 NA | |
IL_4A1B_032 | 1/1/779:780, 1/1/800:802 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.4 | |
IL_4A1B_033 | 1/1/781:786, 1/1/794:799 | No text annotation | ||
IL_4A1B_034 | 1/1/828:830, 1/1/963:965 | Isolated non-canonical cWW pair | geometric IL_5TBW_027 NA | |
IL_4A1B_035 | 1/1/830:834, 1/1/956:963 | tHW-tHW cross-strand stack | geometric IL_5TBW_028 NA | |
IL_4A1B_036 | 1/1/853:854, 1/1/920:922 | Single bulged A | geometric IL_4WF9_022 IL_31462.6 | |
IL_4A1B_037 | 1/1/858:863, 1/1/880:886 | Quadruple sheared | geometric IL_3FTF_001 IL_06136.2 | |
IL_4A1B_038 | 1/1/894:897, 1/1/913:915 | Major groove platform with extra cWW | geometric IL_4V9F_028 IL_51387.2 | |
IL_4A1B_039 | 1/1/898:900, 1/1/911:912 | Single bulged U | geometric IL_5TBW_032 NA | |
IL_4A1B_040 | 1/1/932:934, 1/1/944:948 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
IL_4A1B_041 | 1/1/979:981, 1/1/990:992 | Isolated non-canonical cWW pair | geometric IL_5TBW_034 NA | |
IL_4A1B_042 | 1/1/994:995, 1/1/1138:1140 | Single stack bend | geometric IL_5TBW_035 NA | |
IL_4A1B_043 | 1/1/1001:1007, 1/1/1129:1132 | No text annotation | ||
IL_4A1B_044 | 1/1/1009:1011, 1/1/1126:1127 | Single bulged G | geometric IL_5TBW_037 NA | |
IL_4A1B_046 | 1/1/1025:1030, 1/1/1072:1075 | C-loop with bulged stacked A's | geometric IL_5TBW_040 NA | |
IL_4A1B_047 | 1/1/1032:1035, 1/1/1067:1070 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
IL_4A1B_048 | 1/1/1035:1037, 1/1/1065:1067 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
IL_4A1B_049 | 1/1/1039:1042, 1/1/1062:1063 | Minor groove platform | geometric IL_5T83_003 IL_51454.3 | |
IL_4A1B_050 | 1/1/1094:1096, 1/1/1117:1118 | Single bulged C | geometric IL_5J7L_276 IL_61258.15 | |
IL_4A1B_051 | 1/1/1101:1104, 1/1/1111:1112 | Multiple bulged bases | geometric IL_5WLH_001 IL_82107.4 | |
IL_4A1B_052 | 1/1/1147:1149, 1/1/1163:1165 | Isolated non-canonical cWW pair | geometric IL_5TBW_046 NA | |
IL_4A1B_054 | 1/1/1193:1198, 1/1/1355:1360 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_49767.8 | |
IL_4A1B_055 | 1/1/1200:1207, 1/1/1352:1353 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
IL_4A1B_056 | 1/1/1207:1209, 1/1/1351:1352 | Single bulged U | geometric IL_7RQB_038 NA | |
IL_4A1B_057 | 1/1/1214:1221, 1/1/1341:1346 | No text annotation | geometric IL_5TBW_051 NA | |
IL_4A1B_058 | 1/1/1221:1232, 1/1/1326:1341 | No text annotation | geometric IL_5TBW_052 NA | |
IL_4A1B_059 | 1/1/1234:1236, 1/1/1323:1324 | Single bulged U | geometric IL_5TBW_053 NA | |
IL_4A1B_061 | 1/1/1403:1405, 1/1/1454:1457 | Isolated cWS basepair | geometric IL_5TBW_057 NA | |
IL_4A1B_062 | 1/1/1414:1421, 1/1/1441:1445 | Kink-turn | geometric IL_4V9F_048 IL_70923.9 | |
IL_4A1B_063 | 1/1/1424:1426, 1/1/1437:1438 | Single bulged U | geometric IL_3WBM_001 IL_89505.4 | |
IL_4A1B_064 | 1/1/1470:1476, 1/1/2349:2354 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_5TBW_061 NA | |
IL_4A1B_065 | 1/1/1518:1521, 1/1/1859:1860 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
IL_4A1B_066 | 1/1/1527:1531, 1/1/1539:1541 | Minor groove platform | geometric IL_4LFB_037 IL_47078.3 | |
IL_4A1B_067 | 1/1/1558:1562, 1/1/1610:1615 | UAA/GAN | geometric IL_5TBW_063 NA | |
IL_4A1B_068 | 1/1/1585:1589, 1/1/1604:1606 | No text annotation | ||
IL_4A1B_069 | 1/1/1643:1645, 1/1/1849:1850 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
IL_4A1B_070 | 1/1/1648:1651, 1/1/1843:1846 | No text annotation | ||
IL_4A1B_071 | 1/1/1685:1687, 1/1/1812:1814 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
IL_4A1B_072 | 1/1/1693:1694, 1/1/1804:1806 | Single bulged C | geometric IL_5TBW_069 NA | |
IL_4A1B_073 | 1/1/1694:1695, 1/1/1802:1804 | Single stack bend | geometric IL_4WF9_007 IL_90729.1 | |
IL_4A1B_074 | 1/1/1718:1722, 1/1/1772:1777 | No text annotation | geometric IL_5TBW_071 NA | |
IL_4A1B_075 | 1/1/1726:1730, 1/1/1763:1768 | No text annotation | ||
IL_4A1B_076 | 1/1/1733:1734, 1/1/1758:1760 | No text annotation | ||
IL_4A1B_077 | 1/1/1735:1741, 1/1/1751:1757 | Kink-turn | geometric IL_5TBW_073 NA | |
IL_4A1B_078 | 1/1/1907:1913, 1/1/2341:2344 | No text annotation | geometric IL_5TBW_074 NA | |
IL_4A1B_079 | 1/1/1919:1921, 1/1/2333:2335 | Isolated tWW turn | geometric IL_4V9F_060 IL_67095.2 | |
IL_4A1B_080 | 1/1/1922:1925, 1/1/2331:2332 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
IL_4A1B_081 | 1/1/1925:1930, 1/1/2328:2331 | Intercalated tWH | geometric IL_5TBW_077 NA | |
IL_4A1B_082 | 1/1/1942:1947, 1/1/1952:1958 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
IL_4A1B_083 | 1/1/1964:1966, 1/1/2102:2104 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
IL_4A1B_084 | 1/1/2124:2125, 1/1/2318:2320 | Single bulged A | geometric IL_7RQB_069 NA | |
IL_4A1B_085 | 1/1/2152:2157, 1/1/2168:2175 | Kink-turn related | geometric IL_5TBW_083 NA | |
IL_4A1B_086 | 1/1/2191:2194, 1/1/2240:2241 | Major groove intercalation | geometric IL_5TBW_084 NA | |
IL_4A1B_087 | 1/1/2195:2196, 1/1/2236:2239 | Major groove intercalation | geometric IL_7A0S_067 IL_66635.5 | |
IL_4A1B_088 | 1/1/2199:2201, 1/1/2232:2233 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
IL_4A1B_089 | 1/1/2201:2205, 1/1/2230:2232 | Other IL | geometric IL_4PDB_001 IL_36516.3 | |
IL_4A1B_090 | 1/1/2206:2212, 1/1/2223:2229 | No text annotation | geometric IL_5TBW_088 NA | |
IL_4A1B_091 | 1/1/2271:2272, 1/1/2302:2305 | Bulged stacked bases | geometric IL_5TBW_089 NA | |
IL_4A1B_092 | 1/1/2272:2283, 1/1/2299:2302 | No text annotation | geometric IL_5TBW_090 NA | |
IL_4A1B_093 | 1/1/2386:2389, 1/1/2974:2976 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
IL_4A1B_094 | 1/1/2391:2393, 1/1/2969:2972 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
IL_4A1B_095 | 1/1/2404:2406, 1/1/2799:2800 | Single bulged U | geometric IL_5TBW_093 NA | |
IL_4A1B_096 | 1/1/2407:2408, 1/1/2795:2798 | Minor groove platform | geometric IL_5TBW_094 NA | |
IL_4A1B_097 | 1/1/2418:2421, 1/1/2592:2596 | No text annotation | geometric IL_3NPQ_006 IL_96332.5 | |
IL_4A1B_099 | 1/1/2515:2521, 1/1/2573:2576 | No text annotation | geometric IL_5TBW_096 NA | |
IL_4A1B_100 | 1/1/2557:2558, 1/1/2561:2563 | Single bulged U | geometric IL_2PN3_003 IL_89505.4 | |
IL_4A1B_101 | 1/1/2603:2604, 1/1/2614:2616 | Single bulged A | geometric IL_4V9F_079 IL_31462.6 | |
IL_4A1B_102 | 1/1/2655:2657, 1/1/2675:2679 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
IL_4A1B_103 | 1/1/2707:2710, 1/1/2724:2727 | Tandem non-canonical cWW pairs | geometric IL_6CZR_168 NA | |
IL_4A1B_104 | 1/1/2758:2760, 1/1/2775:2777 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_87907.2 | |
IL_4A1B_105 | 1/1/2760:2762, 1/1/2774:2775 | Single bulged U | geometric IL_4V9F_107 IL_89505.4 | |
IL_4A1B_106 | 1/1/2811:2812, 1/1/2853:2855 | Major groove platform | geometric IL_5TBW_102 NA | |
IL_4A1B_107 | 1/1/2812:2814, 1/1/2851:2853 | Isolated non-canonical cWW pair | geometric IL_5TBW_103 NA | |
IL_4A1B_108 | 1/1/2814:2816, 1/1/2850:2851 | Major groove platform | geometric IL_5TBW_104 NA | |
IL_4A1B_109 | 1/1/2816:2818, 1/1/2846:2850 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
IL_4A1B_110 | 1/1/2823:2827, 1/1/2837:2841 | Triple sheared | geometric IL_5TBW_106 NA | |
IL_4A1B_111 | 1/1/2864:2865, 1/1/2937:2939 | Major groove platform | geometric IL_5TBW_107 NA | |
IL_4A1B_112 | 1/1/2867:2869, 1/1/2931:2935 | Isolated non-canonical cWW with bulges | geometric IL_5TBW_108 NA | |
IL_4A1B_113 | 1/1/2869:2870, 1/1/2928:2931 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
IL_4A1B_114 | 1/1/2879:2880, 1/1/2897:2900 | Major groove platform with intercalation | geometric IL_5TBW_111 NA | |
IL_4A1B_115 | 1/1/2906:2908, 1/1/2914:2916 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
IL_4A1B_116 | 1/1/2948:2949, 1/1/2958:2960 | Single bulged A | geometric IL_4P43_003 NA | |
IL_4A1B_117 | 1/1/2993:2996, 1/1/3128:3133 | Double sheared | geometric IL_5TBW_114 NA | |
IL_4A1B_118 | 1/1/3007:3014, 1/1/3019:3025 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
IL_4A1B_119 | 1/1/3036:3040, 1/1/3080:3083 | C-loop | geometric IL_4WF9_101 IL_63596.11 | |
IL_4A1B_120 | 1/1/3043:3048, 1/1/3073:3077 | UAA/GAN | geometric IL_4V9F_094 IL_23774.1 | |
IL_4A1B_121 | 1/1/3052:3053, 1/1/3066:3069 | Multiple bulged bases | geometric IL_5J7L_349 IL_42626.2 | |
IL_4A1B_122 | 1/1/3092:3096, 1/1/3116:3120 | UAA/GAN | geometric IL_5TBW_120 NA | |
IL_4A1B_123 | 1/1/3144:3146, 1/1/3247:3248 | Single bulged U | geometric IL_7A0S_075 IL_89505.4 | |
IL_4A1B_124 | 1/1/3158:3160, 1/1/3179:3180 | Single bulged A | geometric IL_3MJA_001 NA | |
IL_4A1B_125 | 1/1/3189:3193, 1/1/3217:3221 | Triple sheared | geometric IL_3IGI_002 IL_50730.2 | |
IL_4A1B_126 | 1/1/3195:3199, 1/1/3212:3215 | UAA/GAN | geometric IL_4V9F_094 IL_23774.1 | |
IL_4A1B_127 | 1/1/3260:3263, 1/1/3271:3274 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
IL_4A1B_128 | 1/1/3281:3282, 1/1/3338:3340 | Minor groove platform related | geometric IL_7TZS_003 IL_51454.3 | |
IL_4A1B_129 | 1/1/3286:3288, 1/1/3329:3334 | Isolated non-canonical cWW with bulges | geometric IL_4PKD_001 IL_07785.1 | |
IL_4A1B_130 | 1/1/3290:3295, 1/1/3323:3327 | No text annotation | geometric IL_5TBW_133 NA | |
IL_4A1B_131 | 1/1/3297:3299, 1/1/3320:3321 | Single bulged U | geometric IL_3MEI_001 IL_89505.4 | |
IL_4A1B_132 | 1/1/3300:3303, 1/1/3316:3319 | Double sheared | geometric IL_4V9F_100 IL_09705.15 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_4A1B_014 | No text annotation | ||
IL_4A1B_045 | No text annotation | ||
IL_4A1B_060 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_4A1B_001 | 1/1/111:121, 1/1/149:158, 1/1/262:266 | No text annotation | ||
J3_4A1B_002 | 1/1/436:440, 1/1/537:540, 1/1/642:646 | No text annotation | ||
J3_4A1B_003 | 1/1/547:549, 1/1/618:624, 1/1/633:635 | No text annotation | ||
J3_4A1B_004 | 1/1/839:845, 1/1/930:932, 1/1/948:951 | No text annotation | geometric J3_8P9A_049 J3_64189.2 | |
J3_4A1B_005 | 1/1/854:856, 1/1/888:892, 1/1/917:920 | No text annotation | geometric J3_8CRE_010 J3_44724.7 | |
J3_4A1B_006 | 1/1/1505:1511, 1/1/1881:1883, 1/1/1895:1898 | No text annotation | geometric J3_8P9A_053 J3_19545.2 | |
J3_4A1B_007 | 1/1/1514:1517, 1/1/1861:1867, 1/1/1876:1878 | No text annotation | geometric J3_8CRE_014 J3_19545.2 | |
J3_4A1B_008 | 1/1/1564:1567, 1/1/1578:1585, 1/1/1606:1608 | No text annotation | ||
J3_4A1B_009 | 1/1/1652:1656, 1/1/1665:1673, 1/1/1832:1842 | No text annotation | ||
J3_4A1B_010 | 1/1/2427:2430, 1/1/2507:2511, 1/1/2580:2586 | No text annotation | geometric J3_4V9F_007 J3_97609.1 | |
J3_4A1B_011 | 1/1/2524:2527, 1/1/2540:2553, 1/1/2567:2570 | No text annotation | ||
J3_4A1B_012 | 1/1/2653:2655, 1/1/2679:2681, 1/1/2690:2695 | No text annotation | geometric J3_8CRE_022 J3_61124.2 | |
J3_4A1B_013 | 1/1/2874:2877, 1/1/2902:2904, 1/1/2918:2924 | No text annotation |
Problematic loops
No problematic loops
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