HL_4A1B_067

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUGAAGGCCUCUAAG

Length

15 nucleotides

Bulged bases

4A1B|1|1|G|3105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70420.7

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-R-R

Number of instances in this motif group

10

Unit IDs

4A1B|1|1|C|3099
4A1B|1|1|U|3100
4A1B|1|1|G|3101
4A1B|1|1|A|3102
4A1B|1|1|A|3103
4A1B|1|1|G|3104
4A1B|1|1|G|3105
4A1B|1|1|C|3106
4A1B|1|1|C|3107
4A1B|1|1|U|3108
4A1B|1|1|C|3109
4A1B|1|1|U|3110
4A1B|1|1|A|3111
4A1B|1|1|A|3112
4A1B|1|1|G|3113

Current chains

Chain 1

26S RRNA

Nearby chains

Chain K

UBIQUITIN-60S RIBOSOMAL PROTEIN L40