HL_4A1B_068

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AAAAAAUAAAAAUUAAGU

Length

18 nucleotides

Bulged bases

4A1B|1|1|A|3162, 4A1B|1|1|A|3168, 4A1B|1|1|U|3174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97784.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4A1B|1|1|A|3161
4A1B|1|1|A|3162
4A1B|1|1|A|3163
4A1B|1|1|A|3164
4A1B|1|1|A|3165
4A1B|1|1|A|3166
4A1B|1|1|U|3167
4A1B|1|1|A|3168
4A1B|1|1|A|3169
4A1B|1|1|A|3170
4A1B|1|1|A|3171
4A1B|1|1|A|3172
4A1B|1|1|U|3173
4A1B|1|1|U|3174
4A1B|1|1|A|3175
4A1B|1|1|A|3176
4A1B|1|1|G|3177
4A1B|1|1|U|3178

Current chains

Chain 1

26S RRNA

Nearby chains

Chain E

RPL6

Chain F

RPL14

Chain X

RPL18A