HL_4A1C_002

3D structure

PDB id

4A1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 5S rRNA, 5.8S rRNA and proteins of molecule 4.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAUUGCAGAACCGCGAG

Length

19 nucleotides

Bulged bases

4A1C|1|2|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10116.1

Basepair signature

cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R

Number of instances in this motif group

1

Unit IDs

4A1C|1|2|C|72
4A1C|1|2|G|73
4A1C|1|2|A|74
4A1C|1|2|A|75
4A1C|1|2|U|76
4A1C|1|2|U|77
4A1C|1|2|G|78
4A1C|1|2|C|79
4A1C|1|2|A|80
4A1C|1|2|G|81
4A1C|1|2|A|82
4A1C|1|2|A|83
4A1C|1|2|C|84
4A1C|1|2|C|85
4A1C|1|2|G|86
4A1C|1|2|C|87
4A1C|1|2|G|88
4A1C|1|2|A|89
4A1C|1|2|G|90

Current chains

Chain 2

5.8S RRNA

Nearby chains

Chain S

RPL26

Chain U

RPL35