4A1C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4A1C_001 | 1/2/50:59 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_4A1C_002 | 1/2/72:90 | No text annotation | geometric HL_8CRE_075 HL_51921.1 | |
| HL_4A1C_003 | 1/2/109:115 | No text annotation | geometric HL_6D12_002 HL_48417.5 | |
| HL_4A1C_005 | 1/3/36:41 | No text annotation | geometric HL_5J7L_203 HL_47787.2 | |
| HL_4A1C_006 | 1/3/86:91 | GNRA | geometric HL_5TBW_186 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4A1C_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4A1C_001 | 1/2/67:69, 1/2/94:97 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_4A1C_002 | 1/2/71:72, 1/2/90:92 | Single bulged U | geometric IL_7KVT_002 IL_89505.4 | |
| IL_4A1C_003 | 1/3/15:16, 1/3/62:64 | Single bulged A | geometric IL_5TBW_372 NA | |
| IL_4A1C_004 | 1/3/21:26, 1/3/56:57 | No text annotation | ||
| IL_4A1C_005 | 1/3/26:27, 1/3/52:56 | No text annotation | ||
| IL_4A1C_006 | 1/3/28:29, 1/3/48:51 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_357 IL_68140.4 | |
| IL_4A1C_007 | 1/3/32:36, 1/3/41:45 | Symmetric double minor groove platform | geometric IL_4V9F_104 IL_58103.11 | |
| IL_4A1C_008 | 1/3/71:78, 1/3/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_04346.10 | |
| IL_4A1C_009 | 1/3/82:85, 1/3/92:94 | Isolated non-canonical cWW pair | geometric IL_4V88_419 NA |
Problematic loops
No problematic loops
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