3D structure

PDB id
4ADV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GGGAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4ADV_031 not in the Motif Atlas
Homologous match to HL_4LFB_032
Geometric discrepancy: 0.09
The information below is about HL_4LFB_032
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

4ADV|1|A|G|1515
4ADV|1|A|G|1516
4ADV|1|A|G|1517
4ADV|1|A|A|1518
4ADV|1|A|A|1519
4ADV|1|A|C|1520

Current chains

Chain A
16S RIBOSOMAL RNA

Nearby chains

Chain V
RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE A

Coloring options:


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