4ADV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4ADV_001 | No text annotation | ||
| HL_4ADV_002 | No text annotation | ||
| HL_4ADV_003 | GNRA | ||
| HL_4ADV_004 | GNRA | ||
| HL_4ADV_005 | UNCG | ||
| HL_4ADV_006 | GNRA related | ||
| HL_4ADV_007 | GNRA | ||
| HL_4ADV_008 | No text annotation | ||
| HL_4ADV_009 | UNCG | ||
| HL_4ADV_010 | GNRA | ||
| HL_4ADV_011 | UNCG | ||
| HL_4ADV_012 | No text annotation | ||
| HL_4ADV_013 | No text annotation | ||
| HL_4ADV_014 | GNRA-like with tWH | ||
| HL_4ADV_015 | No text annotation | ||
| HL_4ADV_016 | GNRA | ||
| HL_4ADV_017 | No text annotation | ||
| HL_4ADV_018 | No text annotation | ||
| HL_4ADV_019 | GNRA | ||
| HL_4ADV_020 | GNRA | ||
| HL_4ADV_021 | No text annotation | ||
| HL_4ADV_022 | GNRA | ||
| HL_4ADV_023 | No text annotation | ||
| HL_4ADV_024 | GNRA | ||
| HL_4ADV_025 | T-loop related | ||
| HL_4ADV_026 | No text annotation | ||
| HL_4ADV_027 | GNRA | ||
| HL_4ADV_028 | GNRA | ||
| HL_4ADV_029 | T-loop with 3 stacked bulged bases | ||
| HL_4ADV_030 | No text annotation | ||
| HL_4ADV_031 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4ADV_001 | Single bulged G | ||
| IL_4ADV_002 | Single bulged A | ||
| IL_4ADV_003 | No text annotation | ||
| IL_4ADV_004 | Minor groove platform | ||
| IL_4ADV_005 | Multiple bulged bases | ||
| IL_4ADV_006 | Minor groove platform with extra cWW | ||
| IL_4ADV_007 | Minor groove platform | ||
| IL_4ADV_008 | Single bulged G | ||
| IL_4ADV_009 | Isolated non-canonical cWW pair | ||
| IL_4ADV_010 | Minor groove platform related | ||
| IL_4ADV_011 | Isolated cWH basepair | ||
| IL_4ADV_012 | tWH-tWH-tHW-tHW | ||
| IL_4ADV_013 | Minor groove platform | ||
| IL_4ADV_014 | Kink-turn with non-sequential stacking | ||
| IL_4ADV_015 | No text annotation | ||
| IL_4ADV_016 | C-loop | ||
| IL_4ADV_017 | Single bulged U | ||
| IL_4ADV_018 | C-loop | ||
| IL_4ADV_019 | Single bulged G | ||
| IL_4ADV_020 | No text annotation | ||
| IL_4ADV_021 | No text annotation | ||
| IL_4ADV_022 | tSH-tHW-tWW | ||
| IL_4ADV_023 | No text annotation | ||
| IL_4ADV_024 | Single stack bend | ||
| IL_4ADV_025 | Single stack bend | ||
| IL_4ADV_026 | Single bulged A | ||
| IL_4ADV_027 | SSU/LSU pseudoknot | ||
| IL_4ADV_028 | Kink-turn related | ||
| IL_4ADV_029 | No text annotation | ||
| IL_4ADV_030 | tSH-tHW-tHS | ||
| IL_4ADV_031 | Major groove platform | ||
| IL_4ADV_032 | Major groove minor groove platform; mini C-loop | ||
| IL_4ADV_033 | No text annotation | ||
| IL_4ADV_034 | Major groove platform; stack outside cWW | ||
| IL_4ADV_035 | Single stack bend | ||
| IL_4ADV_036 | Tandem non-canonical cWW pairs | ||
| IL_4ADV_058 | Triple non-canonical cWW pairs | ||
| IL_4ADV_037 | No text annotation | ||
| IL_4ADV_038 | Kink-turn | ||
| IL_4ADV_039 | Left turn | ||
| IL_4ADV_040 | tSH-tHW-tHS | ||
| IL_4ADV_041 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4ADV_042 | Minor groove platform | ||
| IL_4ADV_043 | No text annotation | ||
| IL_4ADV_044 | Minor groove platform | ||
| IL_4ADV_045 | Single stack bend | ||
| IL_4ADV_046 | Single bulged U | ||
| IL_4ADV_047 | Isolated cWS basepair | ||
| IL_4ADV_048 | Minor groove platform | ||
| IL_4ADV_049 | Single bulged A | ||
| IL_4ADV_050 | Isolated non-canonical cWW pair | ||
| IL_4ADV_051 | No text annotation | ||
| IL_4ADV_052 | Minor groove platform | ||
| IL_4ADV_053 | No text annotation | ||
| IL_4ADV_054 | No text annotation | ||
| IL_4ADV_055 | 180 degree turn | ||
| IL_4ADV_056 | Double sheared with non-canonical cWW | ||
| IL_4ADV_057 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4ADV_010 | No text annotation | ||
| J3_4ADV_014 | No text annotation | ||
| J3_4ADV_011 | No text annotation | ||
| J3_4ADV_015 | No text annotation | ||
| J3_4ADV_012 | No text annotation | ||
| J3_4ADV_001 | No text annotation | ||
| J3_4ADV_002 | No text annotation | ||
| J3_4ADV_003 | No text annotation | ||
| J3_4ADV_004 | No text annotation | ||
| J3_4ADV_005 | No text annotation | ||
| J3_4ADV_016 | No text annotation | ||
| J3_4ADV_006 | No text annotation | ||
| J3_4ADV_007 | No text annotation | ||
| J3_4ADV_017 | No text annotation | ||
| J3_4ADV_008 | No text annotation | ||
| J3_4ADV_018 | No text annotation | ||
| J3_4ADV_009 | No text annotation | ||
| J4_4ADV_001 | No text annotation | ||
| J4_4ADV_002 | No text annotation | ||
| J4_4ADV_003 | No text annotation | ||
| J5_4ADV_001 | No text annotation | ||
| J5_4ADV_002 | No text annotation | ||
| J5_4ADV_003 | No text annotation |
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