HL_4B3M_033
3D structure
- PDB id
- 4B3M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 30S ribosome in complex with compound 1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4B3M_033 not in the Motif Atlas
- Geometric match to HL_4UYK_001
- Geometric discrepancy: 0.369
- The information below is about HL_4UYK_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4B3M|1|Z|G|30
4B3M|1|Z|A|31
4B3M|1|Z|U|32
4B3M|1|Z|U|33
4B3M|1|Z|G|34
4B3M|1|Z|A|35
4B3M|1|Z|A|36
4B3M|1|Z|A|37
4B3M|1|Z|A|38
4B3M|1|Z|U|39
4B3M|1|Z|C|40
Current chains
- Chain Z
- 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3'
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain W
- 5'-R(*UP*UP*CP*AP*AP*AP)-3'
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