HL_4B3T_006

3D structure

PDB id

4B3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 30S ribosome in complex with compound 39

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4B3T|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4B3T_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0501

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4B3T|1|A|G|259
4B3T|1|A|G|260
4B3T|1|A|U|261
4B3T|1|A|A|262
4B3T|1|A|A|263
4B3T|1|A|U|264
4B3T|1|A|G|265
4B3T|1|A|G|266
4B3T|1|A|C|267

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain Q

30S RIBOSOMAL PROTEIN S17

Chain T

30S RIBOSOMAL PROTEIN S20