HL_4BPP_006

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUGAAUC

Length

8 nucleotides

Bulged bases

4BPP|1|A|U|246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97270.8

Basepair signature

cWW-tWH-R-R-R

Number of instances in this motif group

21

Unit IDs

4BPP|1|A|G|240
4BPP|1|A|A|241
4BPP|1|A|U|242
4BPP|1|A|G|243
4BPP|1|A|A|244
4BPP|1|A|A|245
4BPP|1|A|U|246
4BPP|1|A|C|247

Current chains

Chain A

18S RRNA

Nearby chains

Chain Q

40S RIBOSOMAL PROTEIN RPS11E

Chain W

40S RIBOSOMAL PROTEIN RPS4E

Chain Y

40S RIBOSOMAL PROTEIN S6