#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6 71-72-6
1 HL_4W21_0394W210.720805 LSU rRNAG2664U2665U2666C2667G2668C2669C2670cWW
2 HL_1VX6_0371VX60.59250A LSU rRNAA1876U1877U1878U1879A1880C1881U1882cWWntSHa
3 HL_4A1B_0374A1B0.590401 LSU rRNAG1743A1744U1745U1746A1747U1748C1749cWW
4 HL_1S72_0391S720.56280Other HL (H)0 LSU rRNAC1594G1595U1596A1597A1598U1599G1600cWW
5 HL_4BPP_0064BPP0.48581A SSU rRNAG240A241U242G243A244A245C247cWW
6 HL_3J7A_0043J7A0.32061A SSU rRNAA245A246G247G248A249A250U252cWW
7 HL_3U5F_0063U5F0.360816 SSU rRNAG243A244U245G246A247U248C250cWW
8 HL_4CUX_0064CUX0.407312 SSU rRNAG243A244U245G246A247U248C250cWW
9 HL_2GDI_0042GDI0.49631YTPP riboswitch (THI element)G66A67U68A69A70U71C73cWW
10 HL_2GDI_0022GDI0.52761Other HLXTPP riboswitch (THI element)G66A67U68A69A70U71C73cWW
11 HL_2HOJ_0022HOJ0.52521ATPP riboswitch (THI element)G66A67U68A69A70U71C73cWW
12 HL_2A64_0022A640.32021T-loop with 2 stacked bulged basesA RNase P class BC69U70G71A72G73A74G76cWWtWH
13 HL_3DHS_0023DHS0.21631A RNase P class BC69U70G71A72G73A74G76cWWtWH
14 HL_4A1B_0054A1B0.151611 LSU rRNAU194U195G196G197A198A199A201cWWtWH
15 HL_3U5H_0053U5H0.070015 LSU rRNAU194U195G196G197A198A199A201cWWtWH
16 HL_1S72_0101S720.00001T-loop with 2 stacked bulged bases (H)0 LSU rRNAU312U313G314G315A316A317A319cWWtWH
17 HL_4CUV_0054CUV0.120211 LSU rRNAU194U195G196G197A198A199A201cWWtWH
18 HL_2QBG_0112QBG0.12301B LSU rRNAC305U306G307G308A309A310G312cWWtWH
19 HL_4IOA_0094IOA0.18691T-loop with 1 bulged baseX LSU rRNAC316U317G318G319A320A321G323cWWtWH
20 HL_4QCN_0094QCN0.24431A LSU rRNAU329U330G331G332G333A334G336cWWtWH
21 HL_1VX6_0051VX60.46841A LSU rRNAC202A203G204G205A206A207G209cWWntsS

3D structures

Complete motif including flanking bases
SequenceCounts
UUGGAACA4
GAUAAUGC3
GAUGAUUC2
CUGAGAUG2
CUGGAAAG2
GUUCGCC1
AUUUACU1
GAUUAUC1
CGUAAUG1
GAUGAAUC1
AAGGAAUU1
UUGGGAAG1
CAGGAAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UGGAAC4
AUAAUG3
AGGAAU2
AUGAUU2
UGAGAU2
UGGAAA2
UUCGC1
UUUAC1
AUUAU1
GUAAU1
AUGAAU1
UGGGAA1

Release history

Release1.18
Date2014-10-09
StatusUpdated, 1 parent

Parent motifs

Children motifs

This motif has no children motifs.
Annotations
  • (16)
  • T-loop with 2 stacked bulged bases (H) (1)
  • Other HL (H) (1)
  • T-loop with 2 stacked bulged bases (1)
  • Other HL (1)
  • T-loop with 1 bulged base (1)
  • Basepair signature
    cWW-tWH-R-R-R
    Heat map statistics
    Min 0.07 | Avg 0.46 | Max 0.89
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