HL_4BPP_027

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

4BPP|1|A|G|1215, 4BPP|1|A|G|1217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_95720.1

Basepair signature

cWW-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

4BPP|1|A|A|1210
4BPP|1|A|U|1211
4BPP|1|A|U|1212
4BPP|1|A|G|1213
4BPP|1|A|A|1214
4BPP|1|A|G|1215
4BPP|1|A|A|1216
4BPP|1|A|G|1217
4BPP|1|A|C|1218
4BPP|1|A|U|1219

Current chains

Chain A

18S RRNA

Nearby chains

Chain 9

40S RIBOSOMAL PROTEIN RPS31E

Chain N

40S RIBOSOMAL PROTEIN RPS29E

Chain S

40S RIBOSOMAL PROTEIN RPS15E