HL_4BPP_034

3D structure

PDB id

4BPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the eukaryotic 40S ribosomal subunit in complex with eIF1 and eIF1A - Complex 4

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUCAUCAGC

Length

9 nucleotides

Bulged bases

4BPP|1|A|G|1573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24544.6

Basepair signature

cWW-tWH-R-tSH-R

Number of instances in this motif group

11

Unit IDs

4BPP|1|A|G|1566
4BPP|1|A|U|1567
4BPP|1|A|C|1568
4BPP|1|A|A|1569
4BPP|1|A|U|1570
4BPP|1|A|C|1571
4BPP|1|A|A|1572
4BPP|1|A|G|1573
4BPP|1|A|C|1574

Current chains

Chain A

18S RRNA

Nearby chains

Chain I

40S RIBOSOMAL PROTEIN RPS16E

Chain J

40S RIBOSOMAL PROTEIN RPS20E

Chain N

40S RIBOSOMAL PROTEIN RPS29E

Chain T

40S RIBOSOMAL PROTEIN RPS19E