Motif HL_24544.6 Version HL_24544.6 of this group appears in releases 1.18 to 1.18

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-7	1-8	2-7
1	HL_3J7A_032	3J7A	0.9020	1	A	SSU rRNA	U	1891	U	1892	C	1893	A	1894	U	1895	C	1896	A	1897	A	1899		cWW	ntWW
2	HL_3U5F_035	3U5F	0.8890	1	6	18S rRNA	G	1594	U	1595	C	1596	A	1597	U	1598	C	1599	A	1600	C	1602		cWW	ntWW
3	HL_4W23_032	4W23	0.7445	1	2	18S ribosomal RNA	G	1658	U	1659	C	1660	A	1661	U	1662	A	1663	A	1664	C	1666	ncHH
4	HL_4BPP_034	4BPP	0.7708	1	A	18S RRNA	G	1566	U	1567	C	1568	A	1569	U	1570	C	1571	A	1572	C	1574		cWW	tWH
5	HL_3U5H_037	3U5H	0.8376	1	5	25S rRNA	G	1680	U	1681	U	1682	A	1683	U	1684	C	1685	U	1686	U	1688		cWW
6	HL_4A1B_036	4A1B	0.8635	1	1	26S RRNA	G	1704	U	1705	U	1706	A	1707	U	1708	C	1709	U	1710	U	1712		cWW
7	HL_1VX6_036	1VX6	0.8240	1	A	28S ribosomal RNA	G	1835	U	1836	U	1837	U	1838	U	1839	C	1840	U	1841	U	1843		cWW	ncwW
8	HL_4A1B_034	4A1B	0.0000	2	1	26S RRNA	G	1624	U	1625	U	1626	A	1627	A	1628	U	1629	A	1630	C	1633		cWW	tWH
9	HL_1S72_037	1S72	0.0695	2	0	LSU rRNA	G	1498	U	1499	U	1500	A	1501	A	1502	U	1503	A	1504	C	1507		cWW	tWH
10	HL_2QBG_037	2QBG	0.1078	2	B	23S rRNA	G	1389	U	1390	U	1391	A	1392	A	1393	U	1394	A	1395	C	1398		cWW	tWH
11	HL_4QCN_034	4QCN	0.1144	2	A	23S Ribosomal RNA	G	1435	U	1436	U	1437	A	1438	A	1439	U	1440	A	1441	C	1444		cWW	tWH

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUAAUAUUC	4
GUCAUCAGC	2
GUUAUCUUU	2
UUCAUCAGA	1
GUCAUAAGC	1
GUUUUCUUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUAAUAUU	4
UCAUCAG	3
UUAUCUU	2
UCAUAAG	1
UUUUCUU	1

Release history

Release	1.18
Date	2014-10-09
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_24544.6	Only in the parent motif
HL_24544.5 Compare	HL_1S72_037, HL_2QBG_037, HL_3U5F_035, HL_3U5H_037, HL_4A1B_034, HL_4A1B_036, HL_1VX6_036, HL_4BPP_034, HL_4QCN_034, HL_3J7A_032	HL_4W23_032

Children motifs

This motif has no children motifs.

Annotations: (11)
Basepair signature: cWW-tWH-R-tSH-R
Heat map statistics: Min 0.07 | Avg 0.61 | Max 0.94

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