HL_4BTS_087

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUGUAAAUCUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4BTS_087 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.3935

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36684.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4BTS|1|CA|G|514
4BTS|1|CA|U|515
4BTS|1|CA|G|516
4BTS|1|CA|U|517
4BTS|1|CA|A|518
4BTS|1|CA|A|519
4BTS|1|CA|A|520
4BTS|1|CA|U|521
4BTS|1|CA|C|522
4BTS|1|CA|U|523
4BTS|1|CA|C|524

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain CD

40S RIBOSOMAL PROTEIN RPS9E

Chain CP

40S RIBOSOMAL PROTEIN S24