HL_4CSU_013

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

4CSU|1|B|G|329, 4CSU|1|B|A|330, 4CSU|1|B|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_013 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.202

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

4CSU|1|B|G|327
4CSU|1|B|U|328
4CSU|1|B|G|329
4CSU|1|B|A|330
4CSU|1|B|C|331
4CSU|1|B|A|332
4CSU|1|B|G|333
4CSU|1|B|C|334
4CSU|1|B|C|335

Current chains

Chain B

23S RRNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24