RNA 3D Hub //

4CSU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4CSU_0721/A/34:48No text annotation
homologous
HL_4V9F_074
HL_97756.2
HL_4CSU_0011/A/38:44No text annotation
homologous
HL_5J7L_203
HL_47787.2
HL_4CSU_0021/A/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_4CSU_0031/B/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_4CSU_0041/B/87:95Externally structured
geometric
HL_5TBW_022
NA
HL_4CSU_0051/B/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_4CSU_0061/B/137:142No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_4CSU_0071/B/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_4CSU_0081/B/194:201No text annotation
geometric
HL_4V9F_006
HL_30068.2
HL_4CSU_0091/B/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_4CSU_0101/B/246:252No text annotation
homologous
HL_7A0S_008
HL_37369.2
HL_4CSU_0111/B/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_4CSU_0121/B/319:323No text annotation
homologous
HL_4WF9_011
HL_75660.5
HL_4CSU_0131/B/327:335T-loop with unstacked turn
homologous
HL_7RQB_012
NA
HL_4CSU_0141/B/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_4CSU_0151/B/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_4CSU_0161/B/462:467GNRA
homologous
HL_5J7L_147
HL_37824.7
HL_4CSU_0171/B/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_4CSU_0181/B/543:550No text annotation
geometric
HL_2Y8Y_001
HL_81100.2
HL_4CSU_0191/B/566:575T-loop with 2 stacked bulged bases
geometric
HL_5TBW_014
NA
HL_4CSU_0201/B/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_4CSU_0211/B/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_4CSU_0221/B/641:647GNRA
homologous
HL_4WF9_021
HL_37824.7
HL_4CSU_0231/B/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_4CSU_0241/B/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_4CSU_0251/B/779:785No text annotation
homologous
HL_4WF9_024
HL_87954.2
HL_4CSU_0261/B/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_4CSU_0271/B/885:891No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_4CSU_0281/B/955:962GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_4CSU_0291/B/978:985No text annotation
homologous
HL_4WF9_028
HL_42998.2
HL_4CSU_0301/B/1064:1074No text annotation
homologous
HL_6PRV_001
HL_19210.3
HL_4CSU_0311/B/1092:1099GNRA wlth tandem sheared
homologous
HL_6PRV_002
HL_81538.2
HL_4CSU_0321/B/1172:1177Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_4CSU_0331/B/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.7
HL_4CSU_0341/B/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.8
HL_4CSU_0351/B/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_4CSU_0361/B/1363:1368GNRA
homologous
HL_4WF9_034
HL_37824.7
HL_4CSU_0371/B/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_4CSU_0751/B/1450:1461No text annotation
HL_4CSU_0391/B/1492:1498No text annotation
homologous
HL_7RQB_038
NA
HL_4CSU_0401/B/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_4CSU_0411/B/1565:1568Mini UNCG
homologous
HL_4WF9_037
HL_48778.2
HL_4CSU_0421/B/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_4CSU_0431/B/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_4CSU_0441/B/1691:1696UNCG
homologous
HL_4WF9_040
HL_34617.5
HL_4CSU_0451/B/1728:1731No text annotation
homologous
HL_5J7L_176
HL_32346.4
HL_4CSU_0461/B/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_4CSU_0471/B/1777:1787No text annotation
homologous
HL_4WF9_043
HL_01962.2
HL_4CSU_0481/B/1806:1811No text annotation
homologous
HL_4WF9_044
NA
HL_4CSU_0491/B/1868:1873GNRA
geometric
HL_4V88_218
NA
HL_4CSU_0501/B/1910:1920No text annotation
HL_4CSU_0511/B/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_4CSU_0521/B/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_4CSU_0761/B/2143:2148No text annotation
HL_4CSU_0541/B/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_4CSU_0771/B/2248:2256No text annotation
homologous
HL_9DFE_051
HL_85367.2
HL_4CSU_0561/B/2264:2276No text annotation
homologous
HL_7A0S_053
HL_91939.2
HL_4CSU_0571/B/2303:2313No text annotation
HL_4CSU_0581/B/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_4CSU_0741/B/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_4CSU_0601/B/2374:2379GNRA
homologous
HL_7A0S_057
HL_37824.7
HL_4CSU_0611/B/2404:2413No text annotation
homologous
HL_9DFE_057
HL_53454.2
HL_4CSU_0621/B/2471:2479No text annotation
homologous
HL_5J7L_193
HL_32735.2
HL_4CSU_0631/B/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.4
HL_4CSU_0641/B/2551:2557No text annotation
homologous
HL_4WF9_058
HL_30068.2
HL_4CSU_0651/B/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_4CSU_0661/B/2658:2663GNRA related
geometric
HL_5J7L_179
HL_04783.2
HL_4CSU_0671/B/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_4CSU_0681/B/2745:2759No text annotation
homologous
HL_5J7L_199
HL_74055.2
HL_4CSU_0691/B/2796:2800Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_4CSU_0701/B/2819:2827No text annotation
homologous
HL_7RQB_068
NA
HL_4CSU_0711/B/2856:2861GNRA
homologous
HL_5J7L_202
HL_37824.7

Problematic loops

#loop idProblemSequence
HL_4CSU_038No text annotation
HL_4CSU_073No text annotation
HL_4CSU_053No text annotation
HL_4CSU_055No text annotation
HL_4CSU_059GNRA with extra cWW

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4CSU_0021/A/17:18,
1/A/65:67		Major groove intercalation
homologous
IL_7RQB_111
NA
IL_4CSU_0031/A/23:28,
1/A/56:60		No text annotation
homologous
IL_7A0S_103
IL_18472.4
IL_4CSU_0041/A/30:31,
1/A/51:54		No text annotation
homologous
IL_8P9A_366
IL_15052.4
IL_4CSU_0051/A/34:38,
1/A/44:48		Symmetric double minor groove platform
geometric
IL_4V9F_104
IL_58103.11
IL_4CSU_0061/A/71:79,
1/A/97:105		Bacterial 5S Loop E
homologous
IL_7RQB_115
NA
IL_4CSU_0071/B/24:30,
1/B/510:516		Triple sheared with non-canonical cWW
homologous
IL_7RQB_001
NA
IL_4CSU_0081/B/36:37,
1/B/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_4CSU_0091/B/43:44,
1/B/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.3
IL_4CSU_0101/B/75:76,
1/B/110:112		No text annotation
geometric
IL_8VTW_005
NA
IL_4CSU_1191/B/82:85,
1/B/97:104		Kink-turn
geometric
IL_1U63_003
IL_24134.1
IL_4CSU_0121/B/183:184,
1/B/212:214		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_4CSU_0131/B/188:194,
1/B/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
IL_04346.10
IL_4CSU_0141/B/239:245,
1/B/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_4CSU_0151/B/269:271,
1/B/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_4CSU_0161/B/274:281,
1/B/359:363		No text annotation
IL_4CSU_0181/B/293:295,
1/B/343:347		No text annotation
homologous
IL_4WF9_014
IL_69440.3
IL_4CSU_0191/B/481:484,
1/B/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_4CSU_0201/B/536:539,
1/B/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_4CSU_0211/B/564:566,
1/B/575:577		Isolated non-canonical cWW pair
homologous
IL_4WF9_017
IL_07785.1
IL_4CSU_0221/B/606:610,
1/B/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_4CSU_0231/B/672:674,
1/B/806:808		Isolated non-canonical cWW pair
geometric
IL_1U9S_007
IL_87907.2
IL_4CSU_0241/B/674:678,
1/B/799:806		tHW-tHW cross-strand stack
homologous
IL_7RQB_018
NA
IL_4CSU_0261/B/697:698,
1/B/763:765		Single bulged A
geometric
IL_4V9F_025
IL_31462.6
IL_4CSU_0271/B/702:703,
1/B/728:730		Single bulged G
homologous
IL_5J7L_262
IL_00225.13
IL_4CSU_0281/B/703:707,
1/B/724:728		Triple sheared
geometric
IL_5J7L_263
IL_50730.2
IL_4CSU_0291/B/738:740,
1/B/757:758		Major groove platform
geometric
IL_5TBW_104
NA
IL_4CSU_0301/B/775:777,
1/B/787:791		Multiple bulged bases
homologous
IL_7A0S_021
IL_06549.2
IL_4CSU_0311/B/844:848,
1/B/930:934		No text annotation
IL_4CSU_0321/B/850:851,
1/B/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_4CSU_0331/B/856:862,
1/B/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_4CSU_0341/B/862:863,
1/B/913:915		Single bulged G
geometric
IL_5J7L_271
IL_00225.13
IL_4CSU_0351/B/864:868,
1/B/909:912		C-loop
homologous
IL_5J7L_272
IL_26222.2
IL_4CSU_0361/B/870:872,
1/B/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_4CSU_0371/B/875:883,
1/B/893:902		No text annotation
IL_4CSU_0381/B/994:996,
1/B/1159:1160		Single bulged C
homologous
IL_7A0S_032
IL_61258.15
IL_4CSU_0391/B/998:1002,
1/B/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_4CSU_0401/B/1004:1011,
1/B/1150:1151		SSU/LSU pseudoknot
homologous
IL_7RQB_037
NA
IL_4CSU_0411/B/1011:1013,
1/B/1149:1150		Single bulged U
geometric
IL_7RQB_038
NA
IL_4CSU_0421/B/1018:1024,
1/B/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.5
IL_4CSU_0431/B/1024:1030,
1/B/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_4CSU_0441/B/1031:1034,
1/B/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_4CSU_0451/B/1038:1041,
1/B/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_4CSU_0461/B/1043:1051,
1/B/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_4CSU_0471/B/1059:1062,
1/B/1076:1079		No text annotation
homologous
IL_6PRV_001
IL_92446.2
IL_4CSU_0481/B/1087:1090,
1/B/1101:1102		No text annotation
homologous
IL_6PRV_002
NA
IL_4CSU_1251/B/1196:1198,
1/B/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_4CSU_0501/B/1202:1206,
1/B/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_4CSU_0511/B/1208:1215,
1/B/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_4CSU_0521/B/1262:1269,
1/B/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_4CSU_0531/B/1310:1313,
1/B/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_4CSU_0541/B/1319:1323,
1/B/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_4CSU_0551/B/1351:1355,
1/B/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_4CSU_0561/B/1357:1361,
1/B/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_4CSU_0571/B/1415:1416,
1/B/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_4CSU_0581/B/1417:1421,
1/B/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_4CSU_0591/B/1432:1435,
1/B/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_4CSU_0601/B/1437:1440,
1/B/1551:1555		Other IL
geometric
IL_4WF9_054
IL_99646.2
IL_4CSU_0611/B/1468:1471,
1/B/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_4CSU_0621/B/1474:1478,
1/B/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_4CSU_1261/B/1480:1482,
1/B/1507:1511		No text annotation
IL_4CSU_1271/B/1489:1491,
1/B/1499:1500		Single bulged A
homologous
IL_9DFE_061
IL_31462.6
IL_4CSU_0651/B/1526:1529,
1/B/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
IL_23774.1
IL_4CSU_0661/B/1651:1656,
1/B/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_4CSU_0671/B/1663:1665,
1/B/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_4CSU_0681/B/1666:1669,
1/B/1993:1994		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_4CSU_1221/B/1666:1674,
1/B/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_4CSU_0691/B/1669:1674,
1/B/1990:1993		Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_4CSU_0701/B/1686:1691,
1/B/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_4V9F_063
IL_47346.2
IL_4CSU_0711/B/1712:1718,
1/B/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_4CSU_0721/B/1720:1724,
1/B/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_4CSU_0731/B/1727:1728,
1/B/1731:1733		Single bulged C
geometric
IL_3W3S_001
IL_61258.15
IL_4CSU_0741/B/1770:1771,
1/B/1980:1982		Single bulged A
homologous
IL_5J7L_312
IL_31462.6
IL_4CSU_0751/B/1798:1804,
1/B/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_4CSU_0761/B/1837:1840,
1/B/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_4CSU_0771/B/1841:1842,
1/B/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_4CSU_0781/B/1846:1849,
1/B/1893:1894		Minor groove platform
homologous
IL_7RQB_073
NA
IL_4CSU_1231/B/1851:1860,
1/B/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_4CSU_0791/B/1864:1867,
1/B/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_4CSU_0801/B/1933:1934,
1/B/1964:1967		Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_4CSU_0811/B/1934:1945,
1/B/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_4CSU_0821/B/2050:2052,
1/B/2617:2618		Major groove platform
homologous
IL_4WF9_078
IL_48076.6
IL_4CSU_0831/B/2054:2056,
1/B/2612:2615		Major groove platform with intercalation
geometric
IL_5TBW_092
NA
IL_4CSU_0841/B/2067:2069,
1/B/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_89505.4
IL_4CSU_0851/B/2070:2071,
1/B/2438:2441		Minor groove platform
homologous
IL_5J7L_324
IL_51454.3
IL_4CSU_0861/B/2081:2083,
1/B/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_4CSU_0871/B/2085:2087,
1/B/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_4CSU_1281/B/2103:2105,
1/B/2184:2186		No text annotation
geometric
IL_5E81_401
IL_42997.3
IL_4CSU_0901/B/2108:2110,
1/B/2179:2181		No text annotation
homologous
IL_7RQB_084
NA
IL_4CSU_0911/B/2110:2122,
1/B/2176:2179		No text annotation
IL_4CSU_0921/B/2124:2136,
1/B/2155:2174		No text annotation
IL_4CSU_0941/B/2202:2204,
1/B/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_4CSU_0951/B/2297:2299,
1/B/2317:2321		No text annotation
homologous
IL_5J7L_332
IL_61476.2
IL_4CSU_0961/B/2350:2353,
1/B/2364:2367		Double sheared
homologous
IL_7RQB_089
NA
IL_4CSU_0971/B/2401:2403,
1/B/2414:2415		Major groove platform
homologous
IL_7A0S_082
IL_48076.6
IL_4CSU_0981/B/2453:2454,
1/B/2498:2500		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_4CSU_0991/B/2454:2455,
1/B/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_4CSU_1001/B/2457:2459,
1/B/2493:2494		Major groove platform
geometric
IL_5TBW_104
NA
IL_4CSU_1011/B/2459:2461,
1/B/2489:2493		Major groove minor groove platform with extra cWW
homologous
IL_7RQB_094
NA
IL_4CSU_1021/B/2466:2470,
1/B/2480:2484		Triple sheared
homologous
IL_5J7L_338
IL_17948.2
IL_4CSU_1031/B/2507:2508,
1/B/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_4CSU_1041/B/2510:2512,
1/B/2574:2578		Isolated non-canonical cWW with bulges
geometric
IL_4PKD_001
IL_07785.1
IL_4CSU_1051/B/2512:2513,
1/B/2571:2574		No text annotation
homologous
IL_5J7L_341
IL_42626.2
IL_4CSU_1061/B/2522:2523,
1/B/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_4CSU_1081/B/2591:2592,
1/B/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_4CSU_1091/B/2636:2640,
1/B/2774:2782		tSH-tHS-tHW
homologous
IL_4WF9_099
IL_04638.3
IL_4CSU_1101/B/2652:2658,
1/B/2663:2668		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_019
IL_16458.4
IL_4CSU_1111/B/2680:2684,
1/B/2725:2727		C-loop
homologous
IL_4WF9_101
IL_63596.11
IL_4CSU_1121/B/2687:2691,
1/B/2718:2722		No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_4CSU_1131/B/2695:2696,
1/B/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_4CSU_1141/B/2737:2742,
1/B/2762:2767		UAA/GAN with extra cWW
homologous
IL_7A0S_098
IL_49767.8
IL_4CSU_1151/B/2806:2811,
1/B/2889:2892		No text annotation
geometric
IL_5J7L_351
IL_29471.1
IL_4CSU_1161/B/2838:2839,
1/B/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
IL_66635.5
IL_4CSU_1171/B/2843:2846,
1/B/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_4CSU_1181/B/2847:2852,
1/B/2865:2869		tHS double platform
homologous
IL_5J7L_354
IL_70411.2

Problematic loops

#loop idProblemSequence
IL_4CSU_001Single stack bend
IL_4CSU_011No text annotation
IL_4CSU_017Isolated non-canonical cWW pair
IL_4CSU_025Isolated non-canonical cWW pair
IL_4CSU_120No text annotation
IL_4CSU_049Tandem non-canonical cWW pairs
IL_4CSU_063No text annotation
IL_4CSU_121No text annotation
IL_4CSU_064No text annotation
IL_4CSU_088Tandem non-canonical cWW pairs
IL_4CSU_124Isolated near basepair
IL_4CSU_089Tandem non-canonical cWW pairs
IL_4CSU_093No text annotation
IL_4CSU_107Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4CSU_0011/A/10:16,
1/A/68:70,
1/A/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_4CSU_0111/B/30:31,
1/B/474:481,
1/B/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_4CSU_0141/B/30:31,
1/B/474:484,
1/B/496:510		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_4CSU_0151/B/32:35,
1/B/445:461,
1/B/468:473		No text annotation
homologous
J3_9DFE_003
J3_30040.2
J3_4CSU_0121/B/56:57,
1/B/70:75,
1/B/112:114		No text annotation
J3_4CSU_0161/B/56:57,
1/B/70:76,
1/B/110:114		No text annotation
homologous
J3_9DFE_004
J3_35667.2
J3_4CSU_0021/B/683:689,
1/B/773:775,
1/B/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_4CSU_0031/B/698:700,
1/B/732:736,
1/B/760:763		No text annotation
homologous
J3_4WF9_003
J3_44724.7
J3_4CSU_0041/B/1055:1057,
1/B/1081:1087,
1/B/1102:1104		No text annotation
homologous
J3_6PRV_001
J3_28621.5
J3_4CSU_0051/B/1298:1303,
1/B/1625:1627,
1/B/1639:1642		No text annotation
homologous
J3_4WF9_004
J3_32852.6
J3_4CSU_0061/B/1306:1309,
1/B/1605:1611,
1/B/1620:1622		No text annotation
homologous
J3_7RQB_008
NA
J3_4CSU_0171/B/1344:1350,
1/B/1381:1385,
1/B/1402:1403		No text annotation
J3_4CSU_0181/B/1424:1429,
1/B/1564:1565,
1/B/1568:1574		No text annotation
homologous
J3_5J7L_069
J3_34864.2
J3_4CSU_0071/B/2091:2093,
1/B/2196:2200,
1/B/2223:2228		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_4CSU_0191/B/2282:2284,
1/B/2384:2395,
1/B/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_4CSU_0081/B/2295:2297,
1/B/2321:2323,
1/B/2332:2337		No text annotation
homologous
J3_7RQB_011
NA
J3_4CSU_0091/B/2517:2520,
1/B/2545:2547,
1/B/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_4CSU_0131/B/2789:2791,
1/B/2805:2806,
1/B/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_4CSU_0101/B/2812:2815,
1/B/2831:2836,
1/B/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J4_4CSU_0011/B/268:269,
1/B/370:375,
1/B/399:406,
1/B/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_4CSU_0021/B/297:301,
1/B/316:319,
1/B/323:325,
1/B/337:341		No text annotation
homologous
J4_5J7L_019
J4_71729.5
J4_4CSU_0031/B/601:604,
1/B/624:628,
1/B/635:638,
1/B/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_4CSU_0041/B/1270:1276,
1/B/1294:1295,
1/B/1645:1648,
1/B/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_4CSU_0051/B/1310:1314,
1/B/1338:1343,
1/B/1404:1405,
1/B/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_4CSU_0061/B/1313:1314,
1/B/1338:1343,
1/B/1404:1405,
1/B/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_4CSU_0071/B/1444:1445,
1/B/1466:1467,
1/B/1525:1526,
1/B/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_4CSU_0081/B/1772:1776,
1/B/1788:1792,
1/B/1827:1830,
1/B/1975:1979		No text annotation
homologous
J4_9DFE_007
J4_61477.5
J4_4CSU_0091/B/1833:1835,
1/B/1905:1906,
1/B/1924:1933,
1/B/1967:1972		No text annotation
homologous
J4_5J7L_026
J4_93343.1
J4_4CSU_0101/B/2285:2289,
1/B/2343:2347,
1/B/2370:2372,
1/B/2381:2383		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_4CSU_0111/B/2643:2646,
1/B/2674:2676,
1/B/2731:2735,
1/B/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J5_4CSU_0011/B/47:54,
1/B/116:121,
1/B/130:131,
1/B/148:150,
1/B/176:178		No text annotation
homologous
J5_4WF9_001
J5_01737.2
J5_4CSU_0021/B/531:533,
1/B/560:564,
1/B/577:579,
1/B/1261:1262,
1/B/2017:2018		No text annotation
homologous
J5_4WF9_003
J5_43153.5
J5_4CSU_0031/B/584:589,
1/B/668:671,
1/B/809:812,
1/B/1195:1196,
1/B/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_4CSU_0041/B/1674:1682,
1/B/1706:1707,
1/B/1751:1752,
1/B/1756:1764,
1/B/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_4CSU_0051/B/2057:2064,
1/B/2446:2453,
1/B/2500:2506,
1/B/2583:2588,
1/B/2606:2611		No text annotation
J5_4CSU_0061/B/2074:2077,
1/B/2243:2246,
1/B/2258:2259,
1/B/2281:2282,
1/B/2427:2435		No text annotation
homologous
J5_7A0S_007
J5_39529.1
J6_4CSU_0011/B/45:46,
1/B/179:183,
1/B/214:224,
1/B/231:235,
1/B/262:266,
1/B/426:433		No text annotation
J7_4CSU_0011/B/8:15,
1/B/525:531,
1/B/2018:2023,
1/B/2040:2043,
1/B/2625:2630,
1/B/2788:2789,
1/B/2894:2895		No text annotation
J7_4CSU_0021/B/817:822,
1/B/835:838,
1/B/940:946,
1/B/971:976,
1/B/987:991,
1/B/1163:1164,
1/B/1185:1190		No text annotation

Problematic loops

No problematic loops


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