4CSU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4CSU_072 | No text annotation | ||
| HL_4CSU_001 | No text annotation | ||
| HL_4CSU_002 | Mini UNCG | ||
| HL_4CSU_003 | No text annotation | ||
| HL_4CSU_004 | Externally structured | ||
| HL_4CSU_005 | No text annotation | ||
| HL_4CSU_006 | No text annotation | ||
| HL_4CSU_007 | No text annotation | ||
| HL_4CSU_008 | No text annotation | ||
| HL_4CSU_009 | No text annotation | ||
| HL_4CSU_010 | No text annotation | ||
| HL_4CSU_011 | T-loop with 2 stacked bulged bases | ||
| HL_4CSU_012 | No text annotation | ||
| HL_4CSU_013 | T-loop with unstacked turn | ||
| HL_4CSU_014 | No text annotation | ||
| HL_4CSU_015 | Pseudoknot geometry | ||
| HL_4CSU_016 | GNRA | ||
| HL_4CSU_017 | GNRA | ||
| HL_4CSU_018 | No text annotation | ||
| HL_4CSU_019 | T-loop with 2 stacked bulged bases | ||
| HL_4CSU_020 | No text annotation | ||
| HL_4CSU_021 | GNRA | ||
| HL_4CSU_022 | GNRA | ||
| HL_4CSU_023 | GNRA wlth tandem sheared | ||
| HL_4CSU_024 | No text annotation | ||
| HL_4CSU_025 | No text annotation | ||
| HL_4CSU_026 | No text annotation | ||
| HL_4CSU_027 | No text annotation | ||
| HL_4CSU_028 | GNRA | ||
| HL_4CSU_029 | No text annotation | ||
| HL_4CSU_030 | No text annotation | ||
| HL_4CSU_031 | GNRA wlth tandem sheared | ||
| HL_4CSU_032 | Mini UNCG | ||
| HL_4CSU_033 | GNRA | ||
| HL_4CSU_034 | T-loop with 2 stacked bulged bases | ||
| HL_4CSU_035 | Pseudoknot geometry with 3' bulge | ||
| HL_4CSU_036 | GNRA | ||
| HL_4CSU_037 | No text annotation | ||
| HL_4CSU_038 | No text annotation | ||
| HL_4CSU_075 | No text annotation | ||
| HL_4CSU_039 | No text annotation | ||
| HL_4CSU_040 | UNCG | ||
| HL_4CSU_041 | Mini UNCG | ||
| HL_4CSU_042 | No text annotation | ||
| HL_4CSU_043 | GNRA | ||
| HL_4CSU_044 | UNCG | ||
| HL_4CSU_045 | No text annotation | ||
| HL_4CSU_046 | No text annotation | ||
| HL_4CSU_073 | No text annotation | ||
| HL_4CSU_047 | No text annotation | ||
| HL_4CSU_048 | No text annotation | ||
| HL_4CSU_049 | GNRA | ||
| HL_4CSU_050 | No text annotation | ||
| HL_4CSU_051 | No text annotation | ||
| HL_4CSU_052 | No text annotation | ||
| HL_4CSU_053 | No text annotation | ||
| HL_4CSU_076 | No text annotation | ||
| HL_4CSU_054 | No text annotation | ||
| HL_4CSU_055 | No text annotation | ||
| HL_4CSU_077 | No text annotation | ||
| HL_4CSU_056 | No text annotation | ||
| HL_4CSU_057 | No text annotation | ||
| HL_4CSU_058 | Pseudoknot geometry | ||
| HL_4CSU_059 | GNRA with extra cWW | ||
| HL_4CSU_074 | GNRA | ||
| HL_4CSU_060 | GNRA | ||
| HL_4CSU_061 | No text annotation | ||
| HL_4CSU_062 | No text annotation | ||
| HL_4CSU_063 | GNRA variation | ||
| HL_4CSU_064 | No text annotation | ||
| HL_4CSU_065 | GNRA | ||
| HL_4CSU_066 | GNRA related | ||
| HL_4CSU_067 | Ribsomal LSU H95 | ||
| HL_4CSU_068 | No text annotation | ||
| HL_4CSU_069 | Mini UNCG | ||
| HL_4CSU_070 | No text annotation | ||
| HL_4CSU_071 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4CSU_001 | Single stack bend | ||
| IL_4CSU_002 | Major groove intercalation | ||
| IL_4CSU_003 | No text annotation | ||
| IL_4CSU_004 | No text annotation | ||
| IL_4CSU_005 | Symmetric double minor groove platform | ||
| IL_4CSU_006 | Bacterial 5S Loop E | ||
| IL_4CSU_007 | Triple sheared with non-canonical cWW | ||
| IL_4CSU_008 | Single bulged A | ||
| IL_4CSU_009 | Minor groove platform | ||
| IL_4CSU_010 | No text annotation | ||
| IL_4CSU_011 | No text annotation | ||
| IL_4CSU_119 | Kink-turn | ||
| IL_4CSU_012 | Single stack bend | ||
| IL_4CSU_013 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4CSU_014 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4CSU_015 | No text annotation | ||
| IL_4CSU_016 | No text annotation | ||
| IL_4CSU_017 | Isolated non-canonical cWW pair | ||
| IL_4CSU_018 | No text annotation | ||
| IL_4CSU_019 | No text annotation | ||
| IL_4CSU_020 | Double sheared | ||
| IL_4CSU_021 | Isolated non-canonical cWW pair | ||
| IL_4CSU_022 | AAA cross-strand stack | ||
| IL_4CSU_023 | Isolated non-canonical cWW pair | ||
| IL_4CSU_024 | tHW-tHW cross-strand stack | ||
| IL_4CSU_025 | Isolated non-canonical cWW pair | ||
| IL_4CSU_026 | Single bulged A | ||
| IL_4CSU_027 | Single bulged G | ||
| IL_4CSU_028 | Triple sheared | ||
| IL_4CSU_029 | Major groove platform | ||
| IL_4CSU_030 | Multiple bulged bases | ||
| IL_4CSU_031 | No text annotation | ||
| IL_4CSU_032 | Single stack bend | ||
| IL_4CSU_033 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4CSU_034 | Single bulged G | ||
| IL_4CSU_120 | No text annotation | ||
| IL_4CSU_035 | C-loop with bulged stacked A's | ||
| IL_4CSU_036 | Isolated non-canonical cWW pair | ||
| IL_4CSU_037 | No text annotation | ||
| IL_4CSU_038 | Single bulged C | ||
| IL_4CSU_039 | UAA/GAN | ||
| IL_4CSU_040 | SSU/LSU pseudoknot | ||
| IL_4CSU_041 | Single bulged U | ||
| IL_4CSU_042 | Kink-turn related | ||
| IL_4CSU_043 | No text annotation | ||
| IL_4CSU_044 | Isolated non-canonical cWW pair | ||
| IL_4CSU_045 | Tandem non-canonical cWW pairs | ||
| IL_4CSU_046 | Kink-turn | ||
| IL_4CSU_047 | No text annotation | ||
| IL_4CSU_048 | No text annotation | ||
| IL_4CSU_125 | Isolated cWS basepair | ||
| IL_4CSU_049 | Tandem non-canonical cWW pairs | ||
| IL_4CSU_050 | No text annotation | ||
| IL_4CSU_051 | Kink-turn | ||
| IL_4CSU_052 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4CSU_053 | Major groove platform; stack outside cWW | ||
| IL_4CSU_054 | C-loop | ||
| IL_4CSU_055 | UAA/GAN | ||
| IL_4CSU_056 | tSH-tHW-tHS | ||
| IL_4CSU_057 | No text annotation | ||
| IL_4CSU_058 | UAA/GAN | ||
| IL_4CSU_059 | Tandem non-canonical cWW pairs | ||
| IL_4CSU_060 | Other IL | ||
| IL_4CSU_061 | No text annotation | ||
| IL_4CSU_062 | tSH-tHW-tHS | ||
| IL_4CSU_126 | No text annotation | ||
| IL_4CSU_063 | No text annotation | ||
| IL_4CSU_121 | No text annotation | ||
| IL_4CSU_064 | No text annotation | ||
| IL_4CSU_127 | Single bulged A | ||
| IL_4CSU_065 | UAA/GAN variation | ||
| IL_4CSU_066 | No text annotation | ||
| IL_4CSU_067 | Isolated tWW turn | ||
| IL_4CSU_068 | Major groove platform; stack outside cWW | ||
| IL_4CSU_122 | No text annotation | ||
| IL_4CSU_069 | Intercalated tWH | ||
| IL_4CSU_070 | tSH-tSH-tHH-tHS | ||
| IL_4CSU_071 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4CSU_072 | Triple sheared | ||
| IL_4CSU_073 | Single bulged C | ||
| IL_4CSU_074 | Single bulged A | ||
| IL_4CSU_075 | Kink-turn related | ||
| IL_4CSU_076 | Minor groove platform, major groove intercalation | ||
| IL_4CSU_077 | Major groove intercalation | ||
| IL_4CSU_078 | Minor groove platform | ||
| IL_4CSU_123 | No text annotation | ||
| IL_4CSU_079 | UAA/GAN related | ||
| IL_4CSU_080 | Bulged stacked bases | ||
| IL_4CSU_081 | No text annotation | ||
| IL_4CSU_082 | Major groove platform | ||
| IL_4CSU_083 | Major groove platform with intercalation | ||
| IL_4CSU_084 | Single bulged U | ||
| IL_4CSU_085 | Minor groove platform | ||
| IL_4CSU_086 | Isolated tHS basepair with bulges | ||
| IL_4CSU_087 | Isolated non-canonical cWW pair | ||
| IL_4CSU_088 | Tandem non-canonical cWW pairs | ||
| IL_4CSU_124 | Isolated near basepair | ||
| IL_4CSU_128 | No text annotation | ||
| IL_4CSU_089 | Tandem non-canonical cWW pairs | ||
| IL_4CSU_090 | No text annotation | ||
| IL_4CSU_091 | No text annotation | ||
| IL_4CSU_092 | No text annotation | ||
| IL_4CSU_093 | No text annotation | ||
| IL_4CSU_094 | Single bulged U | ||
| IL_4CSU_095 | No text annotation | ||
| IL_4CSU_096 | Double sheared | ||
| IL_4CSU_097 | Major groove platform | ||
| IL_4CSU_098 | Single stack bend | ||
| IL_4CSU_099 | Major groove platform | ||
| IL_4CSU_100 | Major groove platform | ||
| IL_4CSU_101 | Major groove minor groove platform with extra cWW | ||
| IL_4CSU_102 | Double sheared with non-canonical cWW | ||
| IL_4CSU_103 | Major groove platform | ||
| IL_4CSU_104 | Isolated non-canonical cWW with bulges | ||
| IL_4CSU_105 | No text annotation | ||
| IL_4CSU_106 | Major groove platform with intercalation | ||
| IL_4CSU_107 | Isolated non-canonical cWW pair | ||
| IL_4CSU_108 | Single bulged A | ||
| IL_4CSU_109 | tSH-tHS-tHW | ||
| IL_4CSU_110 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4CSU_111 | C-loop | ||
| IL_4CSU_112 | UAA/GAN related, with intercalation | ||
| IL_4CSU_113 | Multiple bulged bases | ||
| IL_4CSU_114 | UAA/GAN with extra cWW | ||
| IL_4CSU_115 | No text annotation | ||
| IL_4CSU_116 | Major groove intercalation | ||
| IL_4CSU_117 | Multiple bulged bases with non-canonical cWW | ||
| IL_4CSU_118 | tHS double platform |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4CSU_001 | No text annotation | ||
| J3_4CSU_011 | No text annotation | ||
| J3_4CSU_014 | No text annotation | ||
| J3_4CSU_015 | No text annotation | ||
| J3_4CSU_012 | No text annotation | ||
| J3_4CSU_016 | No text annotation | ||
| J3_4CSU_002 | No text annotation | ||
| J3_4CSU_003 | No text annotation | ||
| J3_4CSU_004 | No text annotation | ||
| J3_4CSU_005 | No text annotation | ||
| J3_4CSU_006 | No text annotation | ||
| J3_4CSU_017 | No text annotation | ||
| J3_4CSU_018 | No text annotation | ||
| J3_4CSU_007 | Kink-turn 3-way junction | ||
| J3_4CSU_019 | No text annotation | ||
| J3_4CSU_008 | No text annotation | ||
| J3_4CSU_009 | No text annotation | ||
| J3_4CSU_013 | No text annotation | ||
| J3_4CSU_010 | No text annotation | ||
| J4_4CSU_001 | No text annotation | ||
| J4_4CSU_002 | No text annotation | ||
| J4_4CSU_003 | No text annotation | ||
| J4_4CSU_004 | No text annotation | ||
| J4_4CSU_005 | No text annotation | ||
| J4_4CSU_006 | No text annotation | ||
| J4_4CSU_007 | No text annotation | ||
| J4_4CSU_008 | No text annotation | ||
| J4_4CSU_009 | No text annotation | ||
| J4_4CSU_010 | No text annotation | ||
| J4_4CSU_011 | No text annotation | ||
| J5_4CSU_001 | No text annotation | ||
| J5_4CSU_002 | No text annotation | ||
| J5_4CSU_003 | No text annotation | ||
| J5_4CSU_004 | No text annotation | ||
| J5_4CSU_005 | No text annotation | ||
| J5_4CSU_006 | No text annotation | ||
| J6_4CSU_001 | No text annotation | ||
| J7_4CSU_001 | No text annotation | ||
| J7_4CSU_002 | No text annotation |
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