HL_4CSU_042

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

4CSU|1|B|A|1616, 4CSU|1|B|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_042 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.2988

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4CSU|1|B|C|1612
4CSU|1|B|G|1613
4CSU|1|B|A|1614
4CSU|1|B|C|1615
4CSU|1|B|A|1616
4CSU|1|B|C|1617
4CSU|1|B|A|1618
4CSU|1|B|G|1619

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34

Chain S

50S RIBOSOMAL PROTEIN L22