HL_4CSU_070

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

4CSU|1|B|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_070 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.256

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4CSU|1|B|G|2819
4CSU|1|B|A|2820
4CSU|1|B|A|2821
4CSU|1|B|G|2822
4CSU|1|B|A|2823
4CSU|1|B|C|2824
4CSU|1|B|G|2825
4CSU|1|B|A|2826
4CSU|1|B|C|2827

Current chains

Chain B

23S RRNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain N

50S RIBOSOMAL PROTEIN L17