HL_4CSU_077

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4CSU|1|B|G|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CSU_077 not in the Motif Atlas

Homologous match to HL_9DFE_051

Geometric discrepancy: 0.2649

The information below is about HL_9DFE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4CSU|1|B|C|2248
4CSU|1|B|U|2249
4CSU|1|B|G|2250
4CSU|1|B|G|2251
4CSU|1|B|G|2252
4CSU|1|B|G|2253
4CSU|1|B|C|2254
4CSU|1|B|G|2255
4CSU|1|B|G|2256

Current chains

Chain B

23S RRNA

Nearby chains

Chain 9

GTPASE OBGE/CGTA

Chain M

50S RIBOSOMAL PROTEIN L16

Chain Y

50S RIBOSOMAL PROTEIN L27