HL_4CUV_079

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

4CUV|1|1|U|545, 4CUV|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUV_079 not in the Motif Atlas

Geometric match to HL_8P9A_231

Geometric discrepancy: 0.355

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32682.1

Basepair signature

cWW-F-F

Number of instances in this motif group

3

Unit IDs

4CUV|1|1|C|543
4CUV|1|1|C|544
4CUV|1|1|U|545
4CUV|1|1|C|546
4CUV|1|1|G|547
4CUV|1|1|G|548

Current chains

Chain 1

25S RRNA

Nearby chains