4CUV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4CUV_001 | 1/1/38:45 | No text annotation | geometric HL_8P9A_113 HL_48677.1 | |
| HL_4CUV_002 | 1/1/69:74 | No text annotation | geometric HL_8CRE_002 NA | |
| HL_4CUV_003 | 1/1/90:96 | No text annotation | geometric HL_9DFE_007 HL_76371.1 | |
| HL_4CUV_004 | 1/1/132:136 | No text annotation | geometric HL_8CRE_004 NA | |
| HL_4CUV_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | geometric HL_4V9F_010 HL_13999.1 | |
| HL_4CUV_006 | 1/1/208:212 | No text annotation | geometric HL_7A0S_011 HL_75660.6 | |
| HL_4CUV_007 | 1/1/216:224 | T-loop with unstacked turn | geometric HL_8CRE_007 NA | |
| HL_4CUV_008 | 1/1/278:287 | T-loop related | geometric HL_8P9A_120 HL_63894.1 | |
| HL_4CUV_009 | 1/1/303:312 | No text annotation | geometric HL_8CRE_009 NA | |
| HL_4CUV_010 | 1/1/357:362 | GNRA | geometric HL_8P9A_122 HL_34789.1 | |
| HL_4CUV_011 | 1/1/382:387 | GNRA | geometric HL_5B2T_001 HL_34789.1 | |
| HL_4CUV_079 | 1/1/543:548 | No text annotation | geometric HL_8P9A_231 HL_32682.1 | |
| HL_4CUV_013 | 1/1/599:604 | GNRA | geometric HL_1U9S_004 NA | |
| HL_4CUV_014 | 1/1/640:649 | T-loop with 2 stacked bulged bases | geometric HL_8CRE_013 NA | |
| HL_4CUV_015 | 1/1/686:694 | No text annotation | geometric HL_8CRE_014 NA | |
| HL_4CUV_016 | 1/1/707:712 | GNRA | geometric HL_8P9A_128 HL_34789.1 | |
| HL_4CUV_017 | 1/1/732:737 | GNRA | geometric HL_4AL5_001 HL_34789.1 | |
| HL_4CUV_018 | 1/1/763:768 | No text annotation | geometric HL_8CRE_017 NA | |
| HL_4CUV_019 | 1/1/844:849 | GNRA | geometric HL_6JDV_002 HL_34789.1 | |
| HL_4CUV_020 | 1/1/876:885 | No text annotation | geometric HL_8P9A_132 HL_50204.1 | |
| HL_4CUV_021 | 1/1/910:918 | No text annotation | geometric HL_8P9A_133 HL_79004.1 | |
| HL_4CUV_022 | 1/1/958:963 | No text annotation | geometric HL_4V9F_026 HL_27530.1 | |
| HL_4CUV_023 | 1/1/1023:1029 | GNRA | geometric HL_6CZR_078 NA | |
| HL_4CUV_024 | 1/1/1076:1083 | T-loop related | geometric HL_8CRE_219 HL_63894.1 | |
| HL_4CUV_025 | 1/1/1126:1132 | GNRA | geometric HL_8CRE_024 NA | |
| HL_4CUV_026 | 1/1/1148:1155 | No text annotation | geometric HL_8CRE_025 NA | |
| HL_4CUV_027 | 1/1/1239:1249 | No text annotation | ||
| HL_4CUV_080 | 1/1/1262:1277 | No text annotation | ||
| HL_4CUV_029 | 1/1/1347:1357 | No text annotation | geometric HL_8P9A_141 HL_29762.1 | |
| HL_4CUV_030 | 1/1/1403:1408 | GNRA | geometric HL_8CRE_029 NA | |
| HL_4CUV_031 | 1/1/1462:1470 | T-loop with 2 stacked bulged bases | geometric HL_8P9A_143 HL_33597.1 | |
| HL_4CUV_032 | 1/1/1506:1512 | Pseudoknot geometry with 3' bulge | geometric HL_8CRE_031 NA | |
| HL_4CUV_033 | 1/1/1544:1549 | GNRA variation | geometric HL_8CRE_032 NA | |
| HL_4CUV_081 | 1/1/1565:1574 | No text annotation | ||
| HL_4CUV_035 | 1/1/1599:1608 | No text annotation | geometric HL_8CRE_034 NA | |
| HL_4CUV_036 | 1/1/1634:1639 | GNRA | geometric HL_8P9A_147 HL_34789.1 | |
| HL_4CUV_082 | 1/1/1680:1688 | Pseudoknot geometry | geometric HL_8P9A_148 HL_68642.1 | |
| HL_4CUV_038 | 1/1/1719:1725 | No text annotation | geometric HL_8P9A_149 HL_97067.1 | |
| HL_4CUV_083 | 1/1/1760:1765 | No text annotation | ||
| HL_4CUV_040 | 1/1/1792:1796 | No text annotation | geometric HL_8CRE_197 HL_94980.1 | |
| HL_4CUV_041 | 1/1/1844:1851 | No text annotation | geometric HL_8CRE_040 NA | |
| HL_4CUV_042 | 1/1/1862:1868 | GNRA | geometric HL_8P9A_153 HL_34789.1 | |
| HL_4CUV_043 | 1/1/1923:1928 | UNCG | geometric HL_8ID2_001 HL_61337.1 | |
| HL_4CUV_045 | 1/1/2110:2114 | No text annotation | ||
| HL_4CUV_046 | 1/1/2135:2145 | No text annotation | geometric HL_8CRE_044 NA | |
| HL_4CUV_047 | 1/1/2164:2170 | GNRA | geometric HL_8CRE_045 NA | |
| HL_4CUV_048 | 1/1/2220:2225 | GNRA | geometric HL_8CRE_046 NA | |
| HL_4CUV_084 | 1/1/2252:2264 | No text annotation | geometric HL_8P9A_160 HL_70658.1 | |
| HL_4CUV_050 | 1/1/2292:2300 | No text annotation | geometric HL_8P9A_161 HL_77449.1 | |
| HL_4CUV_051 | 1/1/2369:2378 | No text annotation | geometric HL_8CRE_049 NA | |
| HL_4CUV_085 | 1/1/2466:2489 | No text annotation | ||
| HL_4CUV_053 | 1/1/2535:2544 | No text annotation | ||
| HL_4CUV_054 | 1/1/2568:2573 | No text annotation | ||
| HL_4CUV_055 | 1/1/2616:2624 | No text annotation | geometric HL_8CRE_053 NA | |
| HL_4CUV_056 | 1/1/2633:2645 | No text annotation | geometric HL_8P9A_166 HL_02042.1 | |
| HL_4CUV_057 | 1/1/2673:2681 | No text annotation | geometric HL_8CRE_055 NA | |
| HL_4CUV_058 | 1/1/2693:2700 | Pseudoknot geometry | geometric HL_8CRE_056 NA | |
| HL_4CUV_059 | 1/1/2724:2732 | No text annotation | geometric HL_8CRE_057 NA | |
| HL_4CUV_060 | 1/1/2744:2749 | GNRA | geometric HL_8P9A_170 HL_34789.1 | |
| HL_4CUV_061 | 1/1/2776:2784 | Pseudoknot geometry | geometric HL_8CRE_059 NA | |
| HL_4CUV_062 | 1/1/2840:2848 | No text annotation | geometric HL_5J7L_193 NA | |
| HL_4CUV_063 | 1/1/2897:2904 | GNRA variation | geometric HL_8P9A_173 HL_46665.1 | |
| HL_4CUV_064 | 1/1/2920:2926 | No text annotation | geometric HL_8P9A_174 HL_48677.1 | |
| HL_4CUV_065 | 1/1/2963:2968 | GNRA | geometric HL_4V9F_017 HL_34789.1 | |
| HL_4CUV_066 | 1/1/3025:3030 | GNRA | geometric HL_5J7L_197 NA | |
| HL_4CUV_067 | 1/1/3068:3073 | No text annotation | geometric HL_8P9A_177 HL_12125.1 | |
| HL_4CUV_068 | 1/1/3110:3124 | No text annotation | geometric HL_8CRE_066 NA | |
| HL_4CUV_069 | 1/1/3194:3197 | No text annotation | geometric HL_8CRE_004 NA | |
| HL_4CUV_070 | 1/1/3240:3247 | No text annotation | geometric HL_8CRE_068 NA | |
| HL_4CUV_071 | 1/1/3303:3311 | No text annotation | geometric HL_8CRE_069 NA | |
| HL_4CUV_072 | 1/1/3350:3353 | No text annotation | geometric HL_8CRE_070 NA | |
| HL_4CUV_086 | 1/3/32:45 | No text annotation | geometric HL_8OI5_068 HL_01182.1 | |
| HL_4CUV_073 | 1/3/36:41 | No text annotation | geometric HL_8OI5_069 HL_59381.1 | |
| HL_4CUV_074 | 1/3/88:93 | GNRA | geometric HL_8OI5_070 HL_34789.1 | |
| HL_4CUV_075 | 1/4/47:56 | No text annotation | geometric HL_8P9A_186 HL_17803.1 | |
| HL_4CUV_076 | 1/4/69:89 | No text annotation | geometric HL_8P9A_187 HL_68571.1 | |
| HL_4CUV_077 | 1/4/108:114 | No text annotation | geometric HL_8P9A_188 HL_13184.1 | |
| HL_4CUV_078 | 1/4/124:129 | No text annotation | geometric HL_8CRE_077 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4CUV_002 | 1/1/7:8, 1/4/150:152 | No text annotation | geometric IL_8CRE_002 NA | |
| IL_4CUV_003 | 1/1/13:15, 1/4/144:145 | No text annotation | geometric IL_8CRE_003 NA | |
| IL_4CUV_004 | 1/1/27:28, 1/1/56:58 | Single stack bend | geometric IL_8CRE_004 NA | |
| IL_4CUV_005 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | geometric IL_8CRE_005 NA | |
| IL_4CUV_006 | 1/1/82:89, 1/1/97:103 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_235 IL_53348.1 | |
| IL_4CUV_007 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_8CRE_007 NA | |
| IL_4CUV_008 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | geometric IL_8CRE_008 NA | |
| IL_4CUV_010 | 1/1/163:165, 1/1/257:258 | Single stack bend | geometric IL_8P9A_238 IL_15011.1 | |
| IL_4CUV_012 | 1/1/169:170, 1/1/248:253 | No text annotation | ||
| IL_4CUV_160 | 1/1/177:178, 1/1/238:241 | No text annotation | ||
| IL_4CUV_016 | 1/1/189:191, 1/1/204:205 | No text annotation | geometric IL_8CRE_013 NA | |
| IL_4CUV_017 | 1/1/337:339, 1/4/25:26 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_4CUV_018 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_8CRE_015 NA | |
| IL_4CUV_019 | 1/1/404:410, 1/4/13:19 | No text annotation | geometric IL_8P9A_244 IL_22311.1 | |
| IL_4CUV_020 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | geometric IL_8CRE_085 NA | |
| IL_4CUV_023 | 1/1/512:513, 1/1/577:579 | Single bulged A | geometric IL_8CRE_020 NA | |
| IL_4CUV_024 | 1/1/517:525, 1/1/567:573 | No text annotation | geometric IL_8P9A_247 IL_52712.1 | |
| IL_4CUV_161 | 1/1/531:538, 1/1/553:561 | No text annotation | geometric IL_8CRE_022 NA | |
| IL_4CUV_026 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | geometric IL_8CRE_023 NA | |
| IL_4CUV_027 | 1/1/680:684, 1/1/696:700 | No text annotation | geometric IL_8CRE_024 NA | |
| IL_4CUV_028 | 1/1/725:728, 1/1/741:745 | UAA/GAN variation | geometric IL_8P9A_251 IL_45790.1 | |
| IL_4CUV_029 | 1/1/752:753, 1/1/779:781 | Single bulged A | geometric IL_8CRE_026 NA | |
| IL_4CUV_162 | 1/1/755:756, 1/1/775:777 | No text annotation | geometric IL_8CRE_027 NA | |
| IL_4CUV_031 | 1/1/758:763, 1/1/768:773 | No text annotation | geometric IL_8CRE_028 NA | |
| IL_4CUV_032 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_01003.1 | |
| IL_4CUV_033 | 1/1/805:809, 1/1/931:938 | No text annotation | geometric IL_8P9A_256 IL_73855.1 | |
| IL_4CUV_034 | 1/1/833:834, 1/1/859:861 | No text annotation | geometric IL_8CRE_032 NA | |
| IL_4CUV_035 | 1/1/834:838, 1/1/855:859 | Triple sheared | geometric IL_8CRE_033 NA | |
| IL_4CUV_036 | 1/1/869:872, 1/1/888:890 | No text annotation | geometric IL_8P9A_259 IL_36931.1 | |
| IL_4CUV_037 | 1/1/873:875, 1/1/886:887 | Single bulged U | geometric IL_8P9A_260 IL_97561.1 | |
| IL_4CUV_038 | 1/1/907:909, 1/1/919:923 | No text annotation | geometric IL_8P9A_261 IL_89509.1 | |
| IL_4CUV_039 | 1/1/954:956, 1/1/965:967 | Isolated non-canonical cWW pair | geometric IL_8P9A_262 IL_71625.1 | |
| IL_4CUV_163 | 1/1/969:970, 1/1/1111:1113 | Single stack bend | geometric IL_8P9A_263 IL_15011.1 | |
| IL_4CUV_041 | 1/1/977:981, 1/1/1102:1104 | No text annotation | geometric IL_8P9A_264 IL_25463.2 | |
| IL_4CUV_042 | 1/1/983:985, 1/1/1099:1100 | No text annotation | geometric IL_8CRE_040 NA | |
| IL_4CUV_043 | 1/1/991:997, 1/1/1052:1058 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8P9A_266 IL_94128.1 | |
| IL_4CUV_044 | 1/1/997:998, 1/1/1050:1052 | Minor groove platform | geometric IL_8P9A_267 IL_34520.1 | |
| IL_4CUV_045 | 1/1/999:1004, 1/1/1046:1049 | C-loop with bulged stacked A's | geometric IL_8P9A_268 IL_16301.1 | |
| IL_4CUV_164 | 1/1/1006:1009, 1/1/1041:1044 | Tandem non-canonical cWW pairs | geometric IL_8P9A_269 IL_71194.1 | |
| IL_4CUV_047 | 1/1/1009:1011, 1/1/1039:1041 | Isolated non-canonical cWW pair | geometric IL_8CRE_045 NA | |
| IL_4CUV_165 | 1/1/1014:1018, 1/1/1034:1036 | No text annotation | geometric IL_8P9A_271 IL_11415.1 | |
| IL_4CUV_049 | 1/1/1069:1071, 1/1/1087:1089 | Isolated non-canonical cWW pair | geometric IL_8P9A_272 IL_01003.1 | |
| IL_4CUV_051 | 1/1/1074:1076, 1/1/1083:1084 | Single bulged A | geometric IL_8P9A_273 IL_14190.1 | |
| IL_4CUV_052 | 1/1/1120:1122, 1/1/1136:1138 | Isolated non-canonical cWW pair | geometric IL_8P9A_274 IL_01003.1 | |
| IL_4CUV_054 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | geometric IL_8CRE_051 NA | |
| IL_4CUV_055 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | geometric IL_8P9A_277 IL_07396.1 | |
| IL_4CUV_056 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_8P9A_278 IL_97561.1 | |
| IL_4CUV_057 | 1/1/1187:1194, 1/1/1314:1319 | No text annotation | geometric IL_8CRE_054 NA | |
| IL_4CUV_058 | 1/1/1194:1205, 1/1/1299:1314 | No text annotation | geometric IL_8CRE_055 NA | |
| IL_4CUV_059 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | geometric IL_7VTI_004 NA | |
| IL_4CUV_060 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | geometric IL_5J7L_284 NA | |
| IL_4CUV_062 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | ||
| IL_4CUV_064 | 1/1/1376:1378, 1/1/1428:1431 | Isolated cWS basepair | geometric IL_4V9F_046 IL_42997.4 | |
| IL_4CUV_065 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | geometric IL_8CRE_062 NA | |
| IL_4CUV_066 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | geometric IL_8CRE_063 NA | |
| IL_4CUV_067 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | geometric IL_8P9A_288 IL_14190.1 | |
| IL_4CUV_068 | 1/1/1444:1450, 1/1/2354:2359 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8CRE_065 NA | |
| IL_4CUV_069 | 1/1/1500:1505, 1/1/1513:1516 | No text annotation | ||
| IL_4CUV_070 | 1/1/1532:1536, 1/1/1585:1590 | UAA/GAN | geometric IL_8CRE_067 NA | |
| IL_4CUV_071 | 1/1/1618:1621, 1/1/1824:1826 | No text annotation | geometric IL_8CRE_069 NA | |
| IL_4CUV_072 | 1/1/1623:1631, 1/1/1811:1822 | No text annotation | ||
| IL_4CUV_073 | 1/1/1645:1649, 1/1/1806:1810 | Triple sheared | geometric IL_8CRE_072 NA | |
| IL_4CUV_074 | 1/1/1661:1663, 1/1/1786:1788 | Isolated non-canonical cWW pair | geometric IL_4RBZ_002 NA | |
| IL_4CUV_076 | 1/1/1669:1670, 1/1/1778:1780 | Single bulged C | geometric IL_8P9A_297 IL_05642.1 | |
| IL_4CUV_077 | 1/1/1670:1671, 1/1/1776:1778 | Single stack bend | geometric IL_8CRE_075 NA | |
| IL_4CUV_078 | 1/1/1694:1698, 1/1/1747:1752 | No text annotation | geometric IL_8P9A_299 IL_25943.1 | |
| IL_4CUV_079 | 1/1/1702:1707, 1/1/1737:1743 | No text annotation | geometric IL_8P9A_300 IL_00680.1 | |
| IL_4CUV_080 | 1/1/1711:1717, 1/1/1727:1733 | No text annotation | geometric IL_8P9A_301 IL_93476.1 | |
| IL_4CUV_081 | 1/1/1883:1889, 1/1/2346:2349 | No text annotation | geometric IL_8P9A_302 IL_89862.1 | |
| IL_4CUV_082 | 1/1/1895:1897, 1/1/2338:2340 | No text annotation | geometric IL_8CRE_080 NA | |
| IL_4CUV_083 | 1/1/1898:1901, 1/1/2336:2337 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_4CUV_166 | 1/1/1898:1906, 1/1/2333:2337 | No text annotation | geometric IL_8CRE_082 NA | |
| IL_4CUV_084 | 1/1/1901:1906, 1/1/2333:2336 | No text annotation | geometric IL_8CRE_083 NA | |
| IL_4CUV_085 | 1/1/1918:1923, 1/1/1928:1934 | No text annotation | geometric IL_8CRE_084 NA | |
| IL_4CUV_086 | 1/1/1940:1942, 1/1/2106:2108 | Isolated non-canonical cWW pair | geometric IL_7ZLQ_002 IL_01003.1 | |
| IL_4CUV_087 | 1/1/1947:1948, 1/1/2098:2101 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
| IL_4CUV_089 | 1/1/2128:2129, 1/1/2323:2325 | Single bulged A | geometric IL_8CRE_087 NA | |
| IL_4CUV_090 | 1/1/2156:2161, 1/1/2173:2180 | No text annotation | geometric IL_8P9A_311 IL_14684.1 | |
| IL_4CUV_092 | 1/1/2196:2199, 1/1/2245:2246 | Minor groove platform, major groove intercalation | geometric IL_8CRE_089 NA | |
| IL_4CUV_093 | 1/1/2200:2201, 1/1/2241:2244 | No text annotation | geometric IL_8CRE_090 NA | |
| IL_4CUV_167 | 1/1/2204:2210, 1/1/2235:2238 | No text annotation | ||
| IL_4CUV_096 | 1/1/2211:2217, 1/1/2228:2234 | No text annotation | geometric IL_8CRE_093 NA | |
| IL_4CUV_097 | 1/1/2276:2277, 1/1/2307:2310 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_4CUV_098 | 1/1/2277:2288, 1/1/2304:2307 | No text annotation | geometric IL_8P9A_318 IL_84014.1 | |
| IL_4CUV_099 | 1/1/2391:2394, 1/1/2986:2988 | No text annotation | geometric IL_8CRE_096 NA | |
| IL_4CUV_100 | 1/1/2396:2398, 1/1/2981:2984 | No text annotation | geometric IL_8P9A_320 IL_80025.1 | |
| IL_4CUV_101 | 1/1/2409:2411, 1/1/2811:2812 | No text annotation | geometric IL_8CRE_098 NA | |
| IL_4CUV_102 | 1/1/2412:2413, 1/1/2807:2810 | Minor groove platform | geometric IL_8CRE_099 NA | |
| IL_4CUV_103 | 1/1/2423:2425, 1/1/2604:2607 | No text annotation | geometric IL_8CRE_100 NA | |
| IL_4CUV_104 | 1/1/2435:2438, 1/1/2508:2512 | No text annotation | ||
| IL_4CUV_105 | 1/1/2450:2462, 1/1/2493:2496 | No text annotation | ||
| IL_4CUV_107 | 1/1/2520:2526, 1/1/2584:2587 | No text annotation | geometric IL_8P9A_324 IL_52092.1 | |
| IL_4CUV_108 | 1/1/2614:2615, 1/1/2625:2627 | Single bulged A | geometric IL_8P9A_325 IL_14190.1 | |
| IL_4CUV_109 | 1/1/2666:2668, 1/1/2686:2690 | No text annotation | geometric IL_8P9A_326 IL_14250.1 | |
| IL_4CUV_110 | 1/1/2718:2721, 1/1/2735:2738 | Tandem non-canonical cWW pairs | geometric IL_8P9A_327 IL_15225.1 | |
| IL_4CUV_111 | 1/1/2770:2773, 1/1/2787:2788 | No text annotation | geometric IL_8CRE_110 NA | |
| IL_4CUV_112 | 1/1/2823:2824, 1/1/2865:2867 | Major groove platform | geometric IL_8P9A_329 IL_48076.7 | |
| IL_4CUV_113 | 1/1/2824:2826, 1/1/2863:2865 | Isolated non-canonical cWW pair | geometric IL_8P9A_330 IL_01003.1 | |
| IL_4CUV_114 | 1/1/2826:2828, 1/1/2862:2863 | Major groove platform | geometric IL_4V9F_083 IL_46637.1 | |
| IL_4CUV_115 | 1/1/2828:2830, 1/1/2858:2862 | No text annotation | geometric IL_8P9A_332 IL_36931.1 | |
| IL_4CUV_116 | 1/1/2835:2839, 1/1/2849:2853 | Double sheared with non-canonical cWW | geometric IL_5J7L_338 NA | |
| IL_4CUV_117 | 1/1/2876:2877, 1/1/2949:2951 | No text annotation | geometric IL_8CRE_115 NA | |
| IL_4CUV_118 | 1/1/2879:2881, 1/1/2943:2947 | Isolated non-canonical cWW with bulges | geometric IL_8P9A_335 IL_68118.1 | |
| IL_4CUV_119 | 1/1/2881:2882, 1/1/2940:2943 | No text annotation | geometric IL_8P9A_336 IL_44609.1 | |
| IL_4CUV_120 | 1/1/2889:2891, 1/1/2912:2914 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.1 | |
| IL_4CUV_168 | 1/1/2889:2892, 1/1/2909:2914 | No text annotation | geometric IL_8P9A_338 IL_07469.3 | |
| IL_4CUV_121 | 1/1/2891:2892, 1/1/2909:2912 | No text annotation | geometric IL_8CRE_120 NA | |
| IL_4CUV_122 | 1/1/2918:2920, 1/1/2926:2928 | Isolated non-canonical cWW pair | geometric IL_8P9A_340 IL_01003.1 | |
| IL_4CUV_123 | 1/1/2960:2961, 1/1/2970:2972 | Single bulged A | geometric IL_8P9A_341 IL_14190.1 | |
| IL_4CUV_124 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | geometric IL_8P9A_342 IL_58355.1 | |
| IL_4CUV_169 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | geometric IL_8P9A_343 IL_71625.1 | |
| IL_4CUV_127 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_344 IL_62167.1 | |
| IL_4CUV_128 | 1/1/3047:3051, 1/1/3091:3094 | No text annotation | geometric IL_8P9A_345 IL_06671.1 | |
| IL_4CUV_129 | 1/1/3054:3059, 1/1/3084:3088 | No text annotation | geometric IL_8CRE_127 NA | |
| IL_4CUV_130 | 1/1/3063:3064, 1/1/3077:3080 | No text annotation | geometric IL_8CRE_128 NA | |
| IL_4CUV_131 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | geometric IL_8CRE_129 NA | |
| IL_4CUV_170 | 1/1/3162:3166, 1/1/3284:3288 | No text annotation | geometric IL_8P9A_349 IL_71154.1 | |
| IL_4CUV_133 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.1 | |
| IL_4CUV_134 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_8P9A_351 IL_14190.1 | |
| IL_4CUV_135 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | ||
| IL_4CUV_136 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_3SNP_004 IL_97561.1 | |
| IL_4CUV_138 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | geometric IL_8CRE_133 NA | |
| IL_4CUV_139 | 1/1/3233:3235, 1/1/3252:3254 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_01003.1 | |
| IL_4CUV_140 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_4UYK_003 IL_71194.1 | |
| IL_4CUV_141 | 1/1/3300:3303, 1/1/3311:3314 | Tandem non-canonical cWW pairs | geometric IL_8P9A_356 IL_71194.1 | |
| IL_4CUV_142 | 1/1/3318:3320, 1/1/3387:3388 | Single bulged U | geometric IL_8P9A_357 IL_97561.1 | |
| IL_4CUV_143 | 1/1/3324:3325, 1/1/3381:3383 | Single bulged U | geometric IL_8P9A_358 IL_97561.1 | |
| IL_4CUV_144 | 1/1/3328:3330, 1/1/3373:3378 | No text annotation | geometric IL_8P9A_359 IL_00086.1 | |
| IL_4CUV_145 | 1/1/3332:3337, 1/1/3367:3371 | No text annotation | geometric IL_8P9A_360 IL_48489.1 | |
| IL_4CUV_146 | 1/1/3340:3342, 1/1/3363:3364 | Single bulged U | geometric IL_3TZR_002 NA | |
| IL_4CUV_147 | 1/1/3342:3345, 1/1/3360:3363 | Double sheared; A in syn | geometric IL_8P9A_362 IL_58355.1 | |
| IL_4CUV_149 | 1/1/3349:3350, 1/1/3353:3356 | No text annotation | geometric IL_8CRE_142 NA | |
| IL_4CUV_150 | 1/3/15:16, 1/3/63:65 | Single bulged A | geometric IL_8OI5_134 IL_14190.1 | |
| IL_4CUV_151 | 1/3/21:27, 1/3/53:58 | No text annotation | geometric IL_8P9A_365 IL_41504.1 | |
| IL_4CUV_152 | 1/3/28:29, 1/3/49:52 | No text annotation | geometric IL_8OI5_136 IL_87975.1 | |
| IL_4CUV_153 | 1/3/29:30, 1/3/47:49 | Single stack bend | geometric IL_8P9A_367 IL_15011.1 | |
| IL_4CUV_154 | 1/3/32:36, 1/3/41:45 | No text annotation | geometric IL_8P9A_368 IL_58103.12 | |
| IL_4CUV_155 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8OI5_139 IL_62167.1 | |
| IL_4CUV_156 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.1 | |
| IL_4CUV_157 | 1/4/64:66, 1/4/93:96 | Isolated non-canonical cWW pair | geometric IL_8CRE_150 NA | |
| IL_4CUV_158 | 1/4/68:69, 1/4/89:91 | Single bulged U | geometric IL_8P9A_372 IL_97561.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4CUV_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | geometric J3_8CRE_001 NA | |
| J3_4CUV_012 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_4CUV_013 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | geometric J3_8P9A_045 J3_07616.1 | |
| J3_4CUV_014 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | geometric J3_8CRE_005 NA | |
| J3_4CUV_015 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | geometric J3_8CRE_006 NA | |
| J3_4CUV_016 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | geometric J3_8P9A_048 J3_86133.1 | |
| J3_4CUV_002 | 1/1/814:820, 1/1/905:907, 1/1/923:926 | No text annotation | geometric J3_8P9A_049 J3_46658.1 | |
| J3_4CUV_003 | 1/1/828:831, 1/1/863:867, 1/1/892:897 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_4CUV_017 | 1/1/986:987, 1/1/1062:1066, 1/1/1092:1098 | No text annotation | geometric J3_8CRE_011 NA | |
| J3_4CUV_018 | 1/1/1230:1232, 1/1/1256:1262, 1/1/1277:1279 | No text annotation | geometric J3_5J7L_040 NA | |
| J3_4CUV_005 | 1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874 | No text annotation | geometric J3_8P9A_053 J3_05025.1 | |
| J3_4CUV_006 | 1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854 | No text annotation | geometric J3_8P9A_054 J3_76012.1 | |
| J3_4CUV_019 | 1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613 | No text annotation | geometric J3_8CRE_015 NA | |
| J3_4CUV_020 | 1/1/1537:1542, 1/1/1551:1564, 1/1/1575:1584 | No text annotation | ||
| J3_4CUV_021 | 1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811 | No text annotation | geometric J3_8CRE_017 NA | |
| J3_4CUV_022 | 1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801 | No text annotation | geometric J3_8P9A_058 J3_08594.1 | |
| J3_4CUV_007 | 1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597 | No text annotation | geometric J3_8CRE_019 NA | |
| J3_4CUV_023 | 1/1/2529:2532, 1/1/2547:2563, 1/1/2578:2581 | No text annotation | geometric J3_8CRE_020 NA | |
| J3_4CUV_024 | 1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798 | No text annotation | geometric J3_8CRE_021 NA | |
| J3_4CUV_009 | 1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706 | No text annotation | geometric J3_8P9A_062 J3_05327.1 | |
| J3_4CUV_010 | 1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936 | No text annotation | geometric J3_8P9A_063 J3_44047.1 | |
| J3_4CUV_025 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | ||
| J3_4CUV_011 | 1/1/3298:3300, 1/1/3314:3318, 1/1/3388:3390 | No text annotation | geometric J3_8P9A_065 J3_81015.1 | |
| J3_4CUV_026 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation | geometric J3_8OI5_025 J3_26985.1 | |
| J3_4CUV_027 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | geometric J3_8P9A_067 J3_01004.1 | |
| J4_4CUV_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | ||
| J4_4CUV_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | ||
| J4_4CUV_003 | 1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353 | No text annotation | ||
| J4_4CUV_004 | 1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836 | No text annotation | ||
| J4_4CUV_005 | 1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773 | No text annotation | ||
| J4_4CUV_006 | 1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322 | No text annotation | ||
| J4_4CUV_007 | 1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315 | No text annotation | ||
| J4_4CUV_008 | 1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753 | No text annotation | ||
| J4_4CUV_009 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | ||
| J5_4CUV_001 | 1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | ||
| J5_4CUV_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | ||
| J5_4CUV_003 | 1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787 | No text annotation | ||
| J5_4CUV_004 | 1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333 | No text annotation | ||
| J5_4CUV_005 | 1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980 | No text annotation | ||
| J5_4CUV_006 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804 | No text annotation | ||
| J6_4CUV_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_4CUV_002 | 1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804 | No text annotation | ||
| J7_4CUV_001 | 1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
No problematic loops
Coloring options: