HL_4CUV_082

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4CUV|1|1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CUV_082 not in the Motif Atlas

Geometric match to HL_8P9A_148

Geometric discrepancy: 0.1345

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4CUV|1|1|G|1680
4CUV|1|1|U|1681
4CUV|1|1|U|1682
4CUV|1|1|A|1683
4CUV|1|1|U|1684
4CUV|1|1|C|1685
4CUV|1|1|U|1686
4CUV|1|1|U|1687
4CUV|1|1|U|1688

Current chains

Chain 1

25S RRNA

Nearby chains