HL_4CUX_001

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

4CUX|1|2|U|8, 4CUX|1|2|U|9

QA status

QA data not found

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00311.2

Basepair signature

cWW-R-tHW-R-R-R-R-R-R

Number of instances in this motif group

7

Unit IDs

4CUX|1|2|G|7
4CUX|1|2|U|8
4CUX|1|2|U|9
4CUX|1|2|G|10
4CUX|1|2|A|11
4CUX|1|2|U|12
4CUX|1|2|C|13
4CUX|1|2|C|14
4CUX|1|2|U|15
4CUX|1|2|G|16
4CUX|1|2|C|17

Current chains

Chain 2

18S RRNA

Nearby chains

Chain Z

RNA OF CRICKET-PARALYSIS-VIRUS-IRES