RNA 3D Hub //

4CUX Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4CUX_0011/2/7:17No text annotation
geometric
HL_8CRE_191
HL_31940.1
HL_4CUX_0021/2/70:81No text annotation
HL_4CUX_0031/2/154:160GNRA related
geometric
HL_8CRE_193
HL_34789.1
HL_4CUX_0421/2/186:199No text annotation
HL_4CUX_0051/2/230:235No text annotation
HL_4CUX_0061/2/243:250T-loop with 1 bulged base
geometric
HL_8P9A_195
HL_67772.1
HL_4CUX_0071/2/275:281UNCG variation
geometric
HL_6VMY_004
NA
HL_4CUX_0081/2/330:338No text annotation
geometric
HL_8P9A_197
HL_36455.1
HL_4CUX_0091/2/367:374No text annotation
HL_4CUX_0101/2/393:404No text annotation
geometric
HL_8P9A_199
HL_86432.1
HL_4CUX_0111/2/414:419UNCG
geometric
HL_8K7W_001
NA
HL_4CUX_0121/2/450:456No text annotation
HL_4CUX_0431/2/485:502No text annotation
HL_4CUX_0141/2/520:532No text annotation
geometric
HL_8P9A_203
HL_68749.1
HL_4CUX_0151/2/569:574No text annotation
geometric
HL_8CRE_205
HL_93535.2
HL_4CUX_0161/2/651:683No text annotation
HL_4CUX_0171/2/703:735No text annotation
HL_4CUX_0181/2/764:772No text annotation
geometric
HL_8CRE_207
HL_11974.1
HL_4CUX_0191/2/777:783No text annotation
HL_4CUX_0201/2/829:843No text annotation
geometric
HL_8P9A_236
HL_88364.3
HL_4CUX_0441/2/900:909No text annotation
geometric
HL_8P9A_209
HL_38491.1
HL_4CUX_0221/2/937:942GNRA
geometric
HL_8P9A_210
HL_34789.1
HL_4CUX_0231/2/997:1007No text annotation
geometric
HL_5J7L_017
NA
HL_4CUX_0241/2/1055:1064No text annotation
HL_4CUX_0251/2/1084:1089GNRA
geometric
HL_8CRE_214
HL_34789.1
HL_4CUX_0261/2/1121:1126GNRA
geometric
HL_5M0J_002
NA
HL_4CUX_0271/2/1188:1197No text annotation
geometric
HL_8P9A_215
HL_97521.1
HL_4CUX_0451/2/1238:1247GNRA wlth extra near cWW
geometric
HL_8CRE_217
HL_45359.1
HL_4CUX_0301/2/1309:1316T-loop related
geometric
HL_8CRE_219
HL_63894.1
HL_4CUX_0311/2/1359:1364No text annotation
geometric
HL_4LFB_004
HL_89167.1
HL_4CUX_0321/2/1396:1402No text annotation
geometric
HL_8P9A_220
HL_76371.1
HL_4CUX_0331/2/1501:1506GNRA
geometric
HL_8P9A_221
HL_34789.1
HL_4CUX_0461/2/1550:1561No text annotation
geometric
HL_8CRE_223
HL_50951.1
HL_4CUX_0471/2/1594:1602T-loop with 1 bulged base
geometric
HL_8CRE_224
HL_61418.1
HL_4CUX_0361/2/1690:1711No text annotation
HL_4CUX_0371/2/1778:1783GNRA variation
geometric
HL_8CRE_225
HL_34789.1
HL_4CUX_0481/Z/6045:6072No text annotation
HL_4CUX_0391/Z/6105:6110Mini UNCG
geometric
HL_1ZBH_001
HL_12626.1
HL_4CUX_0411/Z/6180:6196No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4CUX_0011/2/24:26,
1/2/600:601		Single bulged C
geometric
IL_7KGA_004
NA
IL_4CUX_0041/2/37:41,
1/2/466:471		No text annotation
geometric
IL_8CRE_392
IL_12697.1
IL_4CUX_0051/2/50:53,
1/2/427:429		No text annotation
geometric
IL_9DFE_030
IL_82096.1
IL_4CUX_1001/2/58:63,
1/2/87:89		No text annotation
geometric
IL_8CRE_395
IL_61299.5
IL_4CUX_0071/2/64:69,
1/2/82:86		No text annotation
geometric
IL_8P9A_379
IL_21667.2
IL_4CUX_0081/2/109:112,
1/2/302:305		Tandem non-canonical cWW pairs
geometric
IL_8CRE_397
IL_71194.1
IL_4CUX_1011/2/113:116,
1/2/300:301		Other IL
geometric
IL_1J9H_005
NA
IL_4CUX_0101/2/117:122,
1/2/295:299		No text annotation
geometric
IL_8P9A_382
IL_31545.1
IL_4CUX_0111/2/143:149,
1/2/165:172		No text annotation
geometric
IL_8P9A_383
IL_24485.1
IL_4CUX_1021/2/150:152,
1/2/162:164		Isolated cWH basepair
geometric
IL_3R1E_001
NA
IL_4CUX_1031/2/204:208,
1/2/257:263		No text annotation
IL_4CUX_0181/2/270:273,
1/2/283:285		No text annotation
geometric
IL_8CRE_406
IL_15698.4
IL_4CUX_1041/2/311:316,
1/2/348:355		Kink-turn with non-sequential stacking
geometric
IL_8CRE_408
IL_46174.4
IL_4CUX_1051/2/318:323,
1/2/345:346		No text annotation
geometric
IL_8CRE_409
IL_01372.1
IL_4CUX_0211/2/363:365,
1/2/376:381		No text annotation
geometric
IL_8CRE_410
IL_93336.1
IL_4CUX_0221/2/389:391,
1/2/406:408		Isolated cWH basepair
geometric
IL_8CRE_411
IL_10892.1
IL_4CUX_0231/2/411:413,
1/2/420:422		No text annotation
geometric
IL_8CRE_412
IL_42997.4
IL_4CUX_0241/2/443:447,
1/2/460:461		C-loop
geometric
IL_4LFB_015
IL_26900.1
IL_4CUX_0251/2/447:448,
1/2/458:460		No text annotation
geometric
IL_8CRE_415
IL_28408.1
IL_4CUX_0281/2/517:518,
1/2/533:535		Minor groove platform
geometric
IL_8CRE_394
IL_34520.1
IL_4CUX_0291/2/518:520,
1/2/532:533		Minor groove platform
geometric
IL_8CRE_394
IL_34520.1
IL_4CUX_0301/2/550:557,
1/2/587:588		SSU/LSU pseudoknot
geometric
IL_8P9A_402
IL_11411.1
IL_4CUX_0311/2/557:559,
1/2/586:587		Single bulged U
geometric
IL_3MEI_001
NA
IL_4CUX_0321/2/562:568,
1/2/575:583		No text annotation
geometric
IL_8CRE_423
IL_52042.1
IL_4CUX_0331/2/616:622,
1/2/1104:1105		No text annotation
geometric
IL_4LFB_022
IL_20847.1
IL_4CUX_1061/2/624:632,
1/2/967:975		No text annotation
IL_4CUX_0361/2/646:648,
1/2/686:688		Isolated non-canonical cWW pair
geometric
IL_7LYF_002
NA
IL_4CUX_0391/2/746:747,
1/2/802:805		No text annotation
geometric
IL_8CRE_428
IL_73108.1
IL_4CUX_0401/2/748:750,
1/2/799:801		Isolated non-canonical cWW pair
geometric
IL_9DFE_083
IL_71625.1
IL_4CUX_1071/2/751:759,
1/2/791:798		No text annotation
geometric
IL_8P9A_414
IL_59049.2
IL_4CUX_0431/2/865:866,
1/2/962:965		Major groove platform; stack outside cWW
geometric
IL_9DFE_049
IL_74641.1
IL_4CUX_0441/2/868:870,
1/2/957:960		Isolated non-canonical cWW pair
geometric
IL_8P9A_418
IL_01003.1
IL_4CUX_0451/2/871:874,
1/2/953:956		Tandem non-canonical cWW pairs
geometric
IL_8CRE_433
IL_15225.1
IL_4CUX_0461/2/874:878,
1/2/950:953		Tandem non-canonical cWW pairs
geometric
IL_8CRE_434
IL_15225.1
IL_4CUX_1081/2/886:890,
1/2/922:926		Triple non-canonical cWW pairs
geometric
IL_4LFB_065
IL_71154.1
IL_4CUX_1091/2/892:899,
1/2/910:920		No text annotation
IL_4CUX_0491/2/985:990,
1/2/1014:1016		No text annotation
geometric
IL_8CRE_437
IL_31359.1
IL_4CUX_0501/2/990:994,
1/2/1010:1014		tSH-tHW-tHS
geometric
IL_4LFB_033
IL_05821.1
IL_4CUX_0511/2/1034:1036,
1/2/1095:1101		No text annotation
geometric
IL_8CRE_439
IL_82706.2
IL_4CUX_0521/2/1041:1044,
1/2/1074:1077		Tandem non-canonical cWW pairs
geometric
IL_8CRE_440
IL_15225.1
IL_4CUX_0531/2/1051:1053,
1/2/1066:1067		No text annotation
IL_4CUX_0551/2/1111:1118,
1/2/1129:1134		8x6 Sarcin-Ricin with inserted Y; G-bulge
geometric
IL_8P9A_428
IL_84044.1
IL_4CUX_1101/2/1173:1175,
1/2/1464:1466		Isolated non-canonical cWW pair
geometric
IL_8P9A_432
IL_01003.1
IL_4CUX_0581/2/1178:1179,
1/2/1459:1461		Minor groove platform
geometric
IL_8CRE_447
IL_34520.1
IL_4CUX_0601/2/1224:1230,
1/2/1257:1259		No text annotation
IL_4CUX_1111/2/1224:1237,
1/2/1248:1259		No text annotation
IL_4CUX_1121/2/1230:1237,
1/2/1248:1257		No text annotation
IL_4CUX_0631/2/1268:1270,
1/2/1440:1441		Single bulged U
geometric
IL_7VTI_004
NA
IL_4CUX_1131/2/1272:1278,
1/2/1430:1438		No text annotation
geometric
IL_8P9A_439
IL_99893.1
IL_4CUX_0661/2/1280:1281,
1/2/1426:1428		Single bulged A
geometric
IL_8CRE_455
IL_14190.1
IL_4CUX_0671/2/1290:1292,
1/2/1323:1325		Isolated non-canonical cWW pair
geometric
IL_6CZR_411
NA
IL_4CUX_1141/2/1293:1308,
1/2/1317:1322		No text annotation
IL_4CUX_0691/2/1339:1342,
1/2/1383:1385		Isolated non-canonical cWW pair
geometric
IL_8P9A_444
IL_01003.1
IL_4CUX_1151/2/1345:1349,
1/2/1376:1380		No text annotation
IL_4CUX_0731/2/1352:1354,
1/2/1369:1373		Isolated non-canonical cWW pair
geometric
IL_8P9A_471
IL_71625.1
IL_4CUX_0761/2/1488:1494,
1/2/1513:1518		No text annotation
IL_4CUX_1161/2/1495:1498,
1/2/1509:1512		Double sheared
geometric
IL_4LFB_067
IL_58355.1
IL_4CUX_1171/2/1540:1547,
1/2/1564:1571		No text annotation
IL_4CUX_0821/2/1638:1641,
1/2/1760:1764		No text annotation
geometric
IL_5J7L_059
NA
IL_4CUX_0831/2/1642:1644,
1/2/1757:1759		Isolated non-canonical cWW pair
geometric
IL_4LFB_069
IL_01003.1
IL_4CUX_1181/2/1644:1647,
1/2/1753:1757		No text annotation
geometric
IL_8CRE_469
IL_28833.1
IL_4CUX_1191/2/1650:1652,
1/2/1748:1750		Isolated non-canonical cWW pair
geometric
IL_8P9A_456
IL_01003.1
IL_4CUX_0861/2/1653:1656,
1/2/1744:1747		Double sheared
geometric
IL_8P9A_457
IL_58355.1
IL_4CUX_0871/2/1656:1658,
1/2/1743:1744		No text annotation
IL_4CUX_0891/2/1665:1667,
1/2/1734:1736		Isolated non-canonical cWW pair
geometric
IL_7A0S_107
IL_71625.1
IL_4CUX_0901/2/1669:1672,
1/2/1729:1732		Double sheared
geometric
IL_8P9A_460
IL_58355.1
IL_4CUX_0911/2/1672:1674,
1/2/1727:1729		Isolated non-canonical cWW pair
geometric
IL_8CRE_073
NA
IL_4CUX_0921/2/1675:1678,
1/2/1723:1726		Tandem non-canonical cWW pairs
geometric
IL_8CRE_475
IL_71194.1
IL_4CUX_1201/2/1678:1684,
1/2/1717:1723		No text annotation
IL_4CUX_0951/2/1687:1690,
1/2/1711:1714		No text annotation
IL_4CUX_1211/Z/6028:6042,
1/Z/6075:6087		No text annotation
IL_4CUX_0981/Z/6100:6102,
1/Z/6113:6128		No text annotation

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4CUX_0091/2/41:48,
1/2/431:441,
1/2/463:466		No text annotation
J3_4CUX_0101/2/213:228,
1/2/237:243,
1/2/250:252		No text annotation
J3_4CUX_0111/2/633:635,
1/2/861:865,
1/2/965:966		No text annotation
geometric
J3_8P9A_071
J3_01633.1
J3_4CUX_0121/2/633:635,
1/2/861:866,
1/2/962:966		No text annotation
geometric
J3_8P9A_072
J3_17385.5
J3_4CUX_0021/2/760:763,
1/2/773:775,
1/2/785:790		No text annotation
geometric
J3_8P9A_073
J3_97642.2
J3_4CUX_0031/2/881:884,
1/2/928:936,
1/2/943:947		No text annotation
geometric
J3_8P9A_074
J3_23895.1
J3_4CUX_0131/2/1037:1039,
1/2/1079:1083,
1/2/1090:1094		No text annotation
geometric
J3_8P9A_075
J3_94999.1
J3_4CUX_0141/2/1157:1164,
1/2/1581:1587,
1/2/1609:1621		No text annotation
J3_4CUX_0151/2/1168:1171,
1/2/1468:1470,
1/2/1574:1577		No text annotation
geometric
J3_8P9A_077
J3_44359.1
J3_4CUX_0051/2/1180:1187,
1/2/1198:1209,
1/2/1454:1458		No text annotation
geometric
J3_8CRE_080
J3_88451.1
J3_4CUX_0161/2/1211:1220,
1/2/1263:1267,
1/2/1442:1452		No text annotation
J3_4CUX_0061/2/1283:1288,
1/2/1327:1332,
1/2/1419:1424		No text annotation
geometric
J3_8P9A_080
J3_17077.1
J3_4CUX_0171/2/1470:1474,
1/2/1533:1540,
1/2/1571:1574		No text annotation
geometric
J3_8P9A_084
J3_03192.1
J4_4CUX_0011/2/99:107,
1/2/307:309,
1/2/357:361,
1/2/383:384		No text annotation
J4_4CUX_0021/2/622:624,
1/2/975:980,
1/2/1021:1032,
1/2/1103:1104		No text annotation
J5_4CUX_0011/2/31:37,
1/2/471:483,
1/2/504:516,
1/2/536:546,
1/2/592:595		No text annotation
J5_4CUX_0021/2/31:41,
1/2/466:483,
1/2/504:516,
1/2/536:546,
1/2/592:595		No text annotation
J5_4CUX_0031/2/54:57,
1/2/90:97,
1/2/386:388,
1/2/409:411,
1/2/422:426		No text annotation
J5_4CUX_0041/2/124:143,
1/2/172:182,
1/2/203:204,
1/2/263:268,
1/2/287:293		No text annotation

Problematic loops

No problematic loops


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