HL_4CXE_009

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGUAAACUCC

Length

10 nucleotides

Bulged bases

4CXE|1|2|G|306, 4CXE|1|2|U|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_009 not in the Motif Atlas

Geometric match to HL_4ENC_001

Geometric discrepancy: 0.2697

The information below is about HL_4ENC_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_00911.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

4CXE|1|2|G|305
4CXE|1|2|G|306
4CXE|1|2|U|307
4CXE|1|2|A|308
4CXE|1|2|A|309
4CXE|1|2|A|310
4CXE|1|2|C|311
4CXE|1|2|U|312
4CXE|1|2|C|313
4CXE|1|2|C|314

Current chains

Chain 2

28S RRNA

Nearby chains