4CXE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4CXE_001 | 1/2/37:44 | No text annotation | geometric HL_4WF9_006 HL_48677.2 | |
| HL_4CXE_002 | 1/2/68:73 | No text annotation | ||
| HL_4CXE_003 | 1/2/89:95 | No text annotation | geometric HL_7A0S_008 HL_76371.3 | |
| HL_4CXE_004 | 1/2/126:142 | No text annotation | ||
| HL_4CXE_078 | 1/2/201:208 | T-loop with 1 bulged base | geometric HL_8P9A_117 HL_13999.4 | |
| HL_4CXE_006 | 1/2/219:223 | No text annotation | geometric HL_8CRE_052 NA | |
| HL_4CXE_007 | 1/2/227:235 | T-loop with unstacked turn | geometric HL_8CRE_007 NA | |
| HL_4CXE_079 | 1/2/280:289 | T-loop related | geometric HL_8P9A_120 HL_63894.3 | |
| HL_4CXE_009 | 1/2/305:314 | Pseudoknot geometry | geometric HL_4ENC_001 HL_00911.3 | |
| HL_4CXE_010 | 1/2/359:364 | GNRA | geometric HL_4V9F_015 HL_34789.5 | |
| HL_4CXE_011 | 1/2/384:389 | No text annotation | ||
| HL_4CXE_080 | 1/2/1153:1168 | No text annotation | ||
| HL_4CXE_014 | 1/2/1297:1306 | T-loop with 2 stacked bulged bases | geometric HL_8P9A_126 HL_33597.4 | |
| HL_4CXE_081 | 1/2/1344:1353 | No text annotation | ||
| HL_4CXE_016 | 1/2/1369:1374 | GNRA | geometric HL_8P9A_128 HL_34789.5 | |
| HL_4CXE_017 | 1/2/1386:1391 | No text annotation | ||
| HL_4CXE_018 | 1/2/1416:1428 | No text annotation | ||
| HL_4CXE_082 | 1/2/1458:1465 | No text annotation | ||
| HL_4CXE_020 | 1/2/1540:1545 | No text annotation | ||
| HL_4CXE_021 | 1/2/1572:1581 | No text annotation | geometric HL_8P9A_132 HL_50204.2 | |
| HL_4CXE_022 | 1/2/1606:1614 | No text annotation | geometric HL_8P9A_133 HL_46211.1 | |
| HL_4CXE_023 | 1/2/1654:1659 | No text annotation | geometric HL_8CRE_021 NA | |
| HL_4CXE_024 | 1/2/1742:1748 | No text annotation | ||
| HL_4CXE_025 | 1/2/1795:1802 | T-loop related | geometric HL_8CRE_023 NA | |
| HL_4CXE_026 | 1/2/1842:1848 | GNRA | geometric HL_8P9A_137 HL_34789.5 | |
| HL_4CXE_027 | 1/2/1864:1871 | No text annotation | geometric HL_8P9A_138 HL_47171.2 | |
| HL_4CXE_030 | 1/2/2293:2298 | GNRA | geometric HL_8P9A_147 HL_34789.5 | |
| HL_4CXE_031 | 1/2/2353:2361 | T-loop with 2 stacked bulged bases | geometric HL_8P9A_143 HL_33597.4 | |
| HL_4CXE_083 | 1/2/2397:2403 | Pseudoknot geometry with 3' bulge | geometric HL_8P9A_144 HL_49081.1 | |
| HL_4CXE_033 | 1/2/2435:2440 | GNRA variation | geometric HL_8CRE_032 NA | |
| HL_4CXE_084 | 1/2/2464:2468 | Mini UNCG | geometric HL_4LFB_005 HL_90436.4 | |
| HL_4CXE_035 | 1/2/2500:2509 | No text annotation | geometric HL_8P9A_146 HL_77449.2 | |
| HL_4CXE_036 | 1/2/2537:2544 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.3 | |
| HL_4CXE_037 | 1/2/2555:2560 | GNRA | geometric HL_8P9A_147 HL_34789.5 | |
| HL_4CXE_038 | 1/2/2601:2609 | No text annotation | ||
| HL_4CXE_039 | 1/2/2641:2647 | T-loop related | geometric HL_8CRE_219 HL_63894.3 | |
| HL_4CXE_040 | 1/2/2681:2689 | No text annotation | ||
| HL_4CXE_041 | 1/2/2715:2719 | Mini UNCG related | geometric HL_4V9F_004 HL_12626.2 | |
| HL_4CXE_042 | 1/2/2769:2776 | No text annotation | geometric HL_8P9A_152 HL_28592.3 | |
| HL_4CXE_043 | 1/2/2787:2793 | GNRA | geometric HL_8P9A_153 HL_34789.5 | |
| HL_4CXE_044 | 1/2/2849:2854 | UNCG | geometric HL_5Y85_004 HL_61337.5 | |
| HL_4CXE_046 | 1/2/3583:3587 | No text annotation | ||
| HL_4CXE_047 | 1/2/3608:3618 | No text annotation | geometric HL_8P9A_157 HL_87681.2 | |
| HL_4CXE_048 | 1/2/3637:3643 | GNRA | geometric HL_8P9A_158 HL_34789.5 | |
| HL_4CXE_049 | 1/2/3693:3698 | GNRA | geometric HL_8P9A_159 HL_34789.5 | |
| HL_4CXE_050 | 1/2/3726:3736 | No text annotation | ||
| HL_4CXE_051 | 1/2/3765:3773 | No text annotation | geometric HL_8P9A_161 HL_77449.2 | |
| HL_4CXE_052 | 1/2/3842:3851 | No text annotation | geometric HL_8P9A_162 HL_78372.2 | |
| HL_4CXE_085 | 1/2/4070:4074 | No text annotation | ||
| HL_4CXE_054 | 1/2/4102:4109 | No text annotation | ||
| HL_4CXE_055 | 1/2/4153:4161 | LSU P loop | geometric HL_7A0S_052 HL_11974.3 | |
| HL_4CXE_056 | 1/2/4170:4182 | No text annotation | geometric HL_8P9A_166 HL_02042.2 | |
| HL_4CXE_057 | 1/2/4210:4218 | No text annotation | geometric HL_8P9A_167 HL_02452.2 | |
| HL_4CXE_058 | 1/2/4230:4237 | Pseudoknot geometry | geometric HL_8P9A_168 HL_52651.3 | |
| HL_4CXE_059 | 1/2/4261:4269 | No text annotation | ||
| HL_4CXE_086 | 1/2/4281:4286 | GNRA | geometric HL_8P9A_170 HL_34789.5 | |
| HL_4CXE_061 | 1/2/4312:4322 | No text annotation | geometric HL_7JRT_001 HL_36265.1 | |
| HL_4CXE_062 | 1/2/4377:4385 | No text annotation | geometric HL_5J7L_193 NA | |
| HL_4CXE_087 | 1/2/4434:4441 | GNRA variation | geometric HL_4V9F_063 HL_46665.3 | |
| HL_4CXE_064 | 1/2/4457:4463 | LSU A loop | geometric HL_8P9A_174 HL_48677.2 | |
| HL_4CXE_065 | 1/2/4500:4505 | GNRA | geometric HL_2Z75_004 HL_34789.5 | |
| HL_4CXE_066 | 1/2/4563:4568 | GNRA | geometric HL_8P9A_131 HL_34789.5 | |
| HL_4CXE_067 | 1/2/4606:4611 | No text annotation | geometric HL_8P9A_177 HL_12125.3 | |
| HL_4CXE_068 | 1/2/4648:4662 | No text annotation | geometric HL_8P9A_178 HL_53269.3 | |
| HL_4CXE_069 | 1/2/4862:4869 | No text annotation | ||
| HL_4CXE_070 | 1/2/4930:4938 | No text annotation | geometric HL_8P9A_181 HL_37889.2 | |
| HL_4CXE_088 | 1/2/4976:4983 | No text annotation | geometric HL_8P9A_179 HL_58375.1 | |
| HL_4CXE_072 | 1/3/47:56 | No text annotation | geometric HL_8CRE_074 NA | |
| HL_4CXE_073 | 1/3/69:88 | No text annotation | geometric HL_8CRE_075 NA | |
| HL_4CXE_074 | 1/3/108:111 | No text annotation | geometric HL_8CRE_052 NA | |
| HL_4CXE_075 | 1/3/122:128 | No text annotation | ||
| HL_4CXE_076 | 1/4/28:51 | No text annotation | ||
| HL_4CXE_077 | 1/4/86:91 | GNRA | geometric HL_5J7L_003 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4CXE_204 | 1/2/4:18, 1/3/139:153 | No text annotation | ||
| IL_4CXE_205 | 1/2/31:37, 1/2/44:51 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.4 | |
| IL_4CXE_005 | 1/2/81:88, 1/2/96:102 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_235 IL_53348.1 | |
| IL_4CXE_206 | 1/2/164:179, 1/2/249:259 | No text annotation | ||
| IL_4CXE_207 | 1/2/181:189, 1/2/246:247 | No text annotation | ||
| IL_4CXE_010 | 1/2/339:341, 1/3/25:26 | Single bulged A | geometric IL_8CRE_014 NA | |
| IL_4CXE_208 | 1/2/378:384, 1/2/389:405 | No text annotation | ||
| IL_4CXE_018 | 1/2/450:452, 1/2/683:685 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_4CXE_209 | 1/2/455:465, 1/2/672:680 | No text annotation | ||
| IL_4CXE_210 | 1/2/471:478, 1/2/665:666 | No text annotation | ||
| IL_4CXE_021 | 1/2/482:484, 1/2/660:661 | No text annotation | ||
| IL_4CXE_211 | 1/2/487:489, 1/2/655:657 | No text annotation | ||
| IL_4CXE_023 | 1/2/491:493, 1/2/651:653 | Isolated non-canonical cWW pair | geometric IL_4YHW_002 IL_01003.5 | |
| IL_4CXE_024 | 1/2/496:498, 1/2/646:648 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_4CXE_212 | 1/2/501:503, 1/2/640:643 | No text annotation | ||
| IL_4CXE_213 | 1/2/708:717, 1/2/921:932 | No text annotation | ||
| IL_4CXE_031 | 1/2/718:725, 1/2/911:920 | No text annotation | ||
| IL_4CXE_033 | 1/2/728:730, 1/2/906:908 | Isolated non-canonical cWW pair | geometric IL_8CRE_130 NA | |
| IL_4CXE_034 | 1/2/733:737, 1/2/900:903 | No text annotation | ||
| IL_4CXE_214 | 1/2/739:740, 1/2/895:898 | Multiple bulged bases | geometric IL_7Q80_001 IL_05670.1 | |
| IL_4CXE_039 | 1/2/1063:1064, 1/2/1193:1197 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
| IL_4CXE_040 | 1/2/1064:1067, 1/2/1189:1193 | No text annotation | ||
| IL_4CXE_215 | 1/2/1077:1078, 1/2/1177:1179 | No text annotation | ||
| IL_4CXE_044 | 1/2/1092:1095, 1/2/1138:1141 | Tandem non-canonical cWW pairs | geometric IL_1L9A_005 NA | |
| IL_4CXE_216 | 1/2/1338:1341, 1/2/1356:1361 | No text annotation | ||
| IL_4CXE_217 | 1/2/1405:1408, 1/2/1436:1439 | No text annotation | geometric IL_8BH9_001 IL_65740.2 | |
| IL_4CXE_051 | 1/2/1411:1414, 1/2/1430:1433 | No text annotation | geometric IL_8BH9_001 IL_65740.2 | |
| IL_4CXE_052 | 1/2/1446:1447, 1/2/1475:1477 | Single bulged A | geometric IL_4LGT_002 IL_14190.3 | |
| IL_4CXE_054 | 1/2/1453:1455, 1/2/1468:1469 | Minor groove platform | geometric IL_7A0S_076 IL_34520.4 | |
| IL_4CXE_218 | 1/2/1499:1505, 1/2/1627:1636 | No text annotation | ||
| IL_4CXE_058 | 1/2/1529:1534, 1/2/1551:1557 | No text annotation | geometric IL_8CRE_465 IL_57885.3 | |
| IL_4CXE_059 | 1/2/1565:1568, 1/2/1584:1586 | No text annotation | geometric IL_9DFE_020 IL_36931.3 | |
| IL_4CXE_060 | 1/2/1569:1571, 1/2/1582:1583 | Single bulged U | geometric IL_8P9A_260 IL_97561.6 | |
| IL_4CXE_061 | 1/2/1603:1605, 1/2/1615:1619 | No text annotation | geometric IL_8P9A_261 IL_89509.2 | |
| IL_4CXE_063 | 1/2/1665:1667, 1/2/1826:1829 | No text annotation | ||
| IL_4CXE_065 | 1/2/1702:1704, 1/2/1816:1817 | No text annotation | geometric IL_8CRE_040 NA | |
| IL_4CXE_219 | 1/2/1710:1717, 1/2/1769:1777 | No text annotation | ||
| IL_4CXE_220 | 1/2/1718:1723, 1/2/1765:1768 | C-loop with bulged stacked A's | geometric IL_8CRE_043 NA | |
| IL_4CXE_069 | 1/2/1725:1728, 1/2/1760:1763 | Tandem non-canonical cWW pairs | geometric IL_3R2D_002 IL_71194.3 | |
| IL_4CXE_221 | 1/2/1728:1730, 1/2/1758:1760 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.5 | |
| IL_4CXE_071 | 1/2/1732:1736, 1/2/1754:1756 | No text annotation | ||
| IL_4CXE_222 | 1/2/1736:1742, 1/2/1748:1754 | No text annotation | ||
| IL_4CXE_075 | 1/2/1793:1795, 1/2/1802:1803 | No text annotation | ||
| IL_4CXE_223 | 1/2/1836:1838, 1/2/1852:1854 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.5 | |
| IL_4CXE_079 | 1/2/1883:1887, 1/2/2045:2049 | UAA/GAN | geometric IL_8P9A_276 IL_08938.2 | |
| IL_4CXE_080 | 1/2/1889:1898, 1/2/2041:2043 | No text annotation | ||
| IL_4CXE_081 | 1/2/1898:1900, 1/2/2040:2041 | No text annotation | ||
| IL_4CXE_082 | 1/2/1904:1911, 1/2/2031:2036 | No text annotation | geometric IL_8CRE_054 NA | |
| IL_4CXE_083 | 1/2/1911:1922, 1/2/2016:2031 | No text annotation | geometric IL_8P9A_280 IL_34501.2 | |
| IL_4CXE_084 | 1/2/1924:1926, 1/2/2013:2014 | No text annotation | geometric IL_8CRE_056 NA | |
| IL_4CXE_086 | 1/2/2060:2063, 1/2/2247:2250 | Tandem non-canonical cWW pairs | geometric IL_1MFQ_004 IL_15225.3 | |
| IL_4CXE_087 | 1/2/2266:2268, 1/2/2319:2322 | Isolated cWS basepair | geometric IL_9DFE_029 IL_42997.6 | |
| IL_4CXE_224 | 1/2/2275:2277, 1/2/2311:2312 | No text annotation | ||
| IL_4CXE_225 | 1/2/2278:2285, 1/2/2305:2310 | No text annotation | ||
| IL_4CXE_090 | 1/2/2288:2290, 1/2/2301:2302 | Single bulged A | geometric IL_4R4V_004 IL_14190.3 | |
| IL_4CXE_091 | 1/2/2335:2342, 1/2/3826:3832 | No text annotation | ||
| IL_4CXE_093 | 1/2/2383:2386, 1/2/2760:2761 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_74641.3 | |
| IL_4CXE_094 | 1/2/2392:2396, 1/2/2404:2406 | C-loop | geometric IL_8P9A_290 IL_63596.13 | |
| IL_4CXE_095 | 1/2/2423:2427, 1/2/2486:2491 | UAA/GAN | geometric IL_8CRE_067 NA | |
| IL_4CXE_098 | 1/2/2519:2521, 1/2/2749:2751 | Isolated non-canonical cWW pair | geometric IL_8CRE_130 NA | |
| IL_4CXE_102 | 1/2/2566:2570, 1/2/2729:2733 | Triple sheared | geometric IL_8P9A_295 IL_15190.3 | |
| IL_4CXE_105 | 1/2/2590:2591, 1/2/2701:2703 | Single bulged A | geometric IL_4L8H_001 IL_14190.3 | |
| IL_4CXE_106 | 1/2/2591:2592, 1/2/2699:2701 | Single stack bend | geometric IL_7MLX_001 IL_15011.4 | |
| IL_4CXE_110 | 1/2/2628:2630, 1/2/2658:2659 | Minor groove platform | geometric IL_7A0S_076 IL_34520.4 | |
| IL_4CXE_226 | 1/2/2633:2639, 1/2/2649:2655 | No text annotation | ||
| IL_4CXE_113 | 1/2/2809:2815, 1/2/3819:3822 | No text annotation | geometric IL_8P9A_302 IL_89862.2 | |
| IL_4CXE_114 | 1/2/2821:2823, 1/2/3811:3813 | Isolated tWW turn | geometric IL_4V9F_060 IL_10432.2 | |
| IL_4CXE_115 | 1/2/2824:2827, 1/2/3809:3810 | No text annotation | geometric IL_8CRE_081 NA | |
| IL_4CXE_227 | 1/2/2824:2832, 1/2/3806:3810 | No text annotation | geometric IL_8P9A_305 IL_80252.2 | |
| IL_4CXE_116 | 1/2/2827:2832, 1/2/3806:3809 | No text annotation | geometric IL_8P9A_306 IL_28217.2 | |
| IL_4CXE_117 | 1/2/2844:2849, 1/2/2854:2860 | No text annotation | geometric IL_9DFE_068 IL_20700.2 | |
| IL_4CXE_118 | 1/2/2866:2868, 1/2/3579:3581 | Isolated non-canonical cWW pair | geometric IL_6IA2_004 IL_01003.5 | |
| IL_4CXE_119 | 1/2/2873:2874, 1/2/3571:3574 | No text annotation | geometric IL_8P9A_309 IL_18824.2 | |
| IL_4CXE_120 | 1/2/3601:3602, 1/2/3796:3798 | Single bulged A | geometric IL_8CRE_087 NA | |
| IL_4CXE_121 | 1/2/3629:3634, 1/2/3646:3653 | No text annotation | geometric IL_8P9A_311 IL_14684.2 | |
| IL_4CXE_122 | 1/2/3669:3672, 1/2/3718:3719 | Minor groove platform, major groove intercalation | geometric IL_8P9A_312 IL_55206.2 | |
| IL_4CXE_123 | 1/2/3673:3674, 1/2/3714:3717 | Multiple bulged bases | geometric IL_5WLH_001 IL_71421.4 | |
| IL_4CXE_124 | 1/2/3677:3679, 1/2/3710:3711 | No text annotation | ||
| IL_4CXE_125 | 1/2/3679:3683, 1/2/3708:3710 | No text annotation | ||
| IL_4CXE_126 | 1/2/3684:3690, 1/2/3701:3707 | No text annotation | geometric IL_8P9A_316 IL_65359.2 | |
| IL_4CXE_128 | 1/2/3723:3724, 1/2/3738:3740 | Single stack bend | geometric IL_4C7O_002 IL_15011.4 | |
| IL_4CXE_130 | 1/2/3749:3750, 1/2/3780:3783 | No text annotation | geometric IL_8CRE_094 NA | |
| IL_4CXE_131 | 1/2/3750:3761, 1/2/3777:3780 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
| IL_4CXE_132 | 1/2/3864:3867, 1/2/4523:4525 | No text annotation | geometric IL_8P9A_319 IL_75527.3 | |
| IL_4CXE_133 | 1/2/3869:3871, 1/2/4518:4521 | No text annotation | geometric IL_8CRE_097 NA | |
| IL_4CXE_228 | 1/2/3882:3884, 1/2/4348:4349 | Single bulged U | geometric IL_8P9A_321 IL_97561.6 | |
| IL_4CXE_135 | 1/2/3885:3886, 1/2/4344:4347 | Minor groove platform | geometric IL_7A0S_076 IL_34520.4 | |
| IL_4CXE_229 | 1/2/3896:3898, 1/2/4141:4144 | No text annotation | geometric IL_8P9A_323 IL_87316.3 | |
| IL_4CXE_230 | 1/2/3917:3921, 1/2/4028:4033 | No text annotation | ||
| IL_4CXE_142 | 1/2/3923:3935, 1/2/4023:4026 | No text annotation | ||
| IL_4CXE_143 | 1/2/3939:3942, 1/2/4006:4019 | No text annotation | geometric IL_1MZP_003 IL_75283.2 | |
| IL_4CXE_146 | 1/2/4151:4152, 1/2/4162:4164 | Single bulged A | geometric IL_4V9F_079 IL_14190.3 | |
| IL_4CXE_148 | 1/2/4255:4258, 1/2/4272:4275 | No text annotation | geometric IL_7WIE_001 IL_37443.1 | |
| IL_4CXE_149 | 1/2/4307:4310, 1/2/4324:4325 | Single stack bend | geometric IL_8P9A_328 IL_15011.4 | |
| IL_4CXE_152 | 1/2/4363:4365, 1/2/4399:4400 | No text annotation | geometric IL_8P9A_331 IL_46637.3 | |
| IL_4CXE_153 | 1/2/4365:4367, 1/2/4395:4399 | No text annotation | geometric IL_8CRE_113 NA | |
| IL_4CXE_154 | 1/2/4372:4376, 1/2/4386:4390 | Double sheared with non-canonical cWW | geometric IL_8P9A_333 IL_87767.3 | |
| IL_4CXE_155 | 1/2/4413:4414, 1/2/4486:4488 | No text annotation | geometric IL_8P9A_334 IL_46637.3 | |
| IL_4CXE_231 | 1/2/4416:4419, 1/2/4477:4484 | No text annotation | ||
| IL_4CXE_158 | 1/2/4426:4428, 1/2/4449:4451 | Isolated non-canonical cWW pair | geometric IL_8CRE_118 NA | |
| IL_4CXE_159 | 1/2/4428:4430, 1/2/4445:4449 | No text annotation | geometric IL_3DD2_004 IL_09353.2 | |
| IL_4CXE_161 | 1/2/4455:4457, 1/2/4463:4465 | Isolated non-canonical cWW pair | geometric IL_8P9A_340 IL_01003.5 | |
| IL_4CXE_232 | 1/2/4497:4498, 1/2/4507:4509 | Single bulged A | geometric IL_8UIW_001 IL_14190.3 | |
| IL_4CXE_164 | 1/2/4540:4545, 1/2/4677:4682 | No text annotation | ||
| IL_4CXE_165 | 1/2/4556:4563, 1/2/4568:4574 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8P9A_344 IL_26290.1 | |
| IL_4CXE_233 | 1/2/4584:4589, 1/2/4629:4633 | No text annotation | ||
| IL_4CXE_167 | 1/2/4592:4597, 1/2/4622:4626 | No text annotation | geometric IL_8P9A_346 IL_98200.2 | |
| IL_4CXE_234 | 1/2/4598:4602, 1/2/4615:4621 | No text annotation | ||
| IL_4CXE_235 | 1/2/4641:4645, 1/2/4665:4669 | UAA/GAN | geometric IL_8P9A_348 IL_08938.2 | |
| IL_4CXE_236 | 1/2/4699:4701, 1/2/4913:4914 | Minor groove platform | geometric IL_7A0S_076 IL_34520.4 | |
| IL_4CXE_173 | 1/2/4702:4705, 1/2/4909:4912 | No text annotation | geometric IL_8BH9_001 IL_65740.2 | |
| IL_4CXE_237 | 1/2/4715:4725, 1/2/4823:4832 | No text annotation | ||
| IL_4CXE_175 | 1/2/4728:4730, 1/2/4818:4820 | Isolated non-canonical cWW pair | geometric IL_4X4N_005 NA | |
| IL_4CXE_238 | 1/2/4733:4736, 1/2/4811:4815 | No text annotation | ||
| IL_4CXE_178 | 1/2/4739:4744, 1/2/4806:4808 | No text annotation | ||
| IL_4CXE_239 | 1/2/4746:4747, 1/2/4802:4804 | Minor groove platform | geometric IL_7A0S_076 IL_34520.4 | |
| IL_4CXE_240 | 1/2/4840:4843, 1/2/4886:4889 | No text annotation | geometric IL_8BH9_001 IL_65740.2 | |
| IL_4CXE_182 | 1/2/4846:4851, 1/2/4879:4883 | No text annotation | ||
| IL_4CXE_183 | 1/2/4854:4856, 1/2/4875:4876 | Minor groove platform | geometric IL_4V9F_075 IL_34520.4 | |
| IL_4CXE_184 | 1/2/4923:4924, 1/2/5018:5020 | No text annotation | geometric IL_8ZA0_002 IL_28408.3 | |
| IL_4CXE_186 | 1/2/4947:4949, 1/2/5012:5014 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_87720.2 | |
| IL_4CXE_187 | 1/2/4951:4952, 1/2/5008:5010 | No text annotation | ||
| IL_4CXE_241 | 1/2/4955:4957, 1/2/5000:5005 | No text annotation | geometric IL_8CRE_138 NA | |
| IL_4CXE_189 | 1/2/4958:4964, 1/2/4994:4999 | No text annotation | ||
| IL_4CXE_190 | 1/2/4967:4969, 1/2/4990:4991 | Single bulged C | geometric IL_3HHN_003 IL_05642.4 | |
| IL_4CXE_191 | 1/2/4969:4972, 1/2/4987:4990 | Double sheared; A in syn | geometric IL_8P9A_362 IL_58355.3 | |
| IL_4CXE_242 | 1/3/64:66, 1/3/92:95 | Isolated non-canonical cWW pair | geometric IL_8CRE_150 NA | |
| IL_4CXE_194 | 1/3/68:69, 1/3/88:90 | Single bulged U | geometric IL_8P9A_372 IL_97561.6 | |
| IL_4CXE_198 | 1/4/15:16, 1/4/62:64 | No text annotation | geometric IL_8GLP_050 IL_73464.2 | |
| IL_4CXE_199 | 1/4/21:27, 1/4/52:57 | No text annotation | geometric IL_8OI5_135 IL_41504.1 | |
| IL_4CXE_201 | 1/4/72:78, 1/4/98:103 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_4WF9_100 IL_16458.6 | |
| IL_4CXE_202 | 1/4/79:81, 1/4/95:97 | Isolated non-canonical cWW pair | geometric IL_8CRE_473 IL_71625.4 | |
| IL_4CXE_203 | 1/4/82:85, 1/4/92:94 | Isolated non-canonical cWW pair | geometric IL_8OI5_140 IL_01003.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4CXE_014 | 1/2/342:358, 1/2/365:370, 1/3/21:24 | No text annotation | geometric J3_5J7L_067 NA | |
| J3_4CXE_015 | 1/2/371:378, 1/2/405:412, 1/3/13:20 | No text annotation | ||
| J3_4CXE_016 | 1/2/371:384, 1/2/389:412, 1/3/13:20 | No text annotation | ||
| J3_4CXE_017 | 1/2/433:446, 1/2/689:692, 1/2/1273:1285 | No text annotation | ||
| J3_4CXE_018 | 1/2/697:701, 1/2/939:956, 1/2/1257:1268 | No text annotation | ||
| J3_4CXE_019 | 1/2/958:969, 1/2/1215:1225, 1/2/1245:1255 | No text annotation | ||
| J3_4CXE_020 | 1/2/971:975, 1/2/1054:1059, 1/2/1201:1213 | No text annotation | ||
| J3_4CXE_021 | 1/2/1081:1088, 1/2/1145:1148, 1/2/1173:1174 | No text annotation | ||
| J3_4CXE_004 | 1/2/1510:1516, 1/2/1601:1603, 1/2/1619:1622 | No text annotation | geometric J3_8CRE_009 NA | |
| J3_4CXE_005 | 1/2/1524:1527, 1/2/1559:1563, 1/2/1588:1593 | No text annotation | geometric J3_8P9A_050 J3_21998.1 | |
| J3_4CXE_022 | 1/2/1705:1706, 1/2/1781:1786, 1/2/1810:1815 | No text annotation | ||
| J3_4CXE_006 | 1/2/2370:2376, 1/2/2782:2784, 1/2/2796:2799 | No text annotation | geometric J3_8CRE_013 NA | |
| J3_4CXE_007 | 1/2/2379:2382, 1/2/2762:2768, 1/2/2777:2779 | No text annotation | geometric J3_8CRE_014 NA | |
| J3_4CXE_023 | 1/2/2417:2422, 1/2/2492:2496, 1/2/2513:2514 | No text annotation | geometric J3_8P9A_055 J3_94309.2 | |
| J3_4CXE_024 | 1/2/2427:2433, 1/2/2442:2456, 1/2/2476:2486 | No text annotation | ||
| J3_4CXE_025 | 1/2/2523:2531, 1/2/2550:2552, 1/2/2734:2747 | No text annotation | ||
| J3_4CXE_026 | 1/2/2552:2553, 1/2/2562:2566, 1/2/2733:2734 | No text annotation | ||
| J3_4CXE_027 | 1/2/2575:2579, 1/2/2714:2715, 1/2/2719:2724 | No text annotation | geometric J3_8CRE_018 NA | |
| J3_4CXE_009 | 1/2/3905:3908, 1/2/4042:4047, 1/2/4127:4134 | No text annotation | ||
| J3_4CXE_028 | 1/2/4050:4065, 1/2/4079:4096, 1/2/4115:4124 | No text annotation | ||
| J3_4CXE_029 | 1/2/4201:4205, 1/2/4223:4229, 1/2/4238:4243 | No text annotation | ||
| J3_4CXE_011 | 1/2/4423:4426, 1/2/4451:4453, 1/2/4467:4473 | No text annotation | geometric J3_9DFE_017 J3_32601.6 | |
| J3_4CXE_030 | 1/2/4708:4713, 1/2/4834:4839, 1/2/4890:4906 | No text annotation | ||
| J3_4CXE_031 | 1/2/4925:4930, 1/2/4938:4947, 1/2/5014:5017 | No text annotation | ||
| J3_4CXE_032 | 1/3/44:45, 1/3/58:64, 1/3/95:99 | No text annotation | geometric J3_8P9A_067 J3_01004.2 | |
| J3_4CXE_013 | 1/4/8:15, 1/4/64:67, 1/4/108:111 | No text annotation | ||
| J4_4CXE_001 | 1/2/192:198, 1/2/211:219, 1/2/223:225, 1/2/237:243 | No text annotation | ||
| J4_4CXE_002 | 1/2/2342:2348, 1/2/2366:2368, 1/2/2801:2806, 1/2/3825:3826 | No text annotation | ||
| J4_4CXE_003 | 1/2/2383:2387, 1/2/2411:2416, 1/2/2515:2516, 1/2/2754:2761 | No text annotation | ||
| J4_4CXE_004 | 1/2/2386:2387, 1/2/2411:2416, 1/2/2515:2516, 1/2/2754:2760 | No text annotation | ||
| J4_4CXE_005 | 1/2/2595:2596, 1/2/2614:2625, 1/2/2662:2675, 1/2/2695:2696 | No text annotation | ||
| J4_4CXE_006 | 1/2/3603:3607, 1/2/3619:3623, 1/2/3659:3663, 1/2/3790:3795 | No text annotation | ||
| J4_4CXE_007 | 1/2/3665:3667, 1/2/3721:3723, 1/2/3740:3749, 1/2/3783:3788 | No text annotation | ||
| J4_4CXE_008 | 1/2/4191:4195, 1/2/4249:4253, 1/2/4277:4279, 1/2/4288:4290 | No text annotation | ||
| J4_4CXE_009 | 1/2/4547:4552, 1/2/4578:4581, 1/2/4636:4638, 1/2/4672:4675 | No text annotation | ||
| J5_4CXE_001 | 1/2/111:125, 1/2/143:157, 1/2/266:274, 1/2/295:301, 1/2/318:321 | No text annotation | ||
| J5_4CXE_002 | 1/2/1315:1320, 1/2/1495:1498, 1/2/1637:1640, 1/2/2264:2266, 1/2/2322:2328 | No text annotation | ||
| J5_4CXE_003 | 1/2/2832:2840, 1/2/2864:2865, 1/2/3582:3583, 1/2/3587:3595, 1/2/3804:3806 | No text annotation | ||
| J5_4CXE_004 | 1/2/3872:3879, 1/2/4352:4363, 1/2/4400:4412, 1/2/4489:4494, 1/2/4512:4517 | No text annotation | ||
| J6_4CXE_001 | 1/2/1332:1335, 1/2/1364:1368, 1/2/1375:1379, 1/2/1398:1401, 1/2/1443:1445, 1/2/1478:1483 | No text annotation | ||
| J6_4CXE_002 | 1/2/3889:3892, 1/2/4148:4151, 1/2/4164:4165, 1/2/4187:4190, 1/2/4291:4302, 1/2/4330:4341 | No text annotation | ||
| J7_4CXE_001 | 1/2/1645:1652, 1/2/1661:1664, 1/2/1830:1833, 1/2/1857:1862, 1/2/1873:1877, 1/2/2055:2056, 1/2/2254:2259 | No text annotation | ||
| J9_4CXE_001 | 1/2/19:27, 1/2/55:67, 1/2/74:78, 1/2/105:109, 1/2/323:335, 1/3/30:42, 1/3/101:106, 1/3/113:114, 1/3/136:138 | No text annotation |
Problematic loops
No problematic loops
Coloring options: