HL_4CXE_027

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

4CXE|1|2|A|1869, 4CXE|1|2|A|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_027 not in the Motif Atlas

Geometric match to HL_8P9A_138

Geometric discrepancy: 0.2731

The information below is about HL_8P9A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|G|1864
4CXE|1|2|G|1865
4CXE|1|2|A|1866
4CXE|1|2|U|1867
4CXE|1|2|G|1868
4CXE|1|2|A|1869
4CXE|1|2|A|1870
4CXE|1|2|C|1871

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA