HL_4CXE_035

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

4CXE|1|2|U|2507, 4CXE|1|2|C|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_035 not in the Motif Atlas

Geometric match to HL_8P9A_146

Geometric discrepancy: 0.2338

The information below is about HL_8P9A_146

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4CXE|1|2|G|2500
4CXE|1|2|U|2501
4CXE|1|2|U|2502
4CXE|1|2|C|2503
4CXE|1|2|A|2504
4CXE|1|2|G|2505
4CXE|1|2|A|2506
4CXE|1|2|U|2507
4CXE|1|2|C|2508
4CXE|1|2|C|2509

Current chains

Chain 2

28S RRNA

Nearby chains