HL_4CXE_036

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

4CXE|1|2|C|2540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_036 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3925

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4CXE|1|2|C|2537
4CXE|1|2|C|2538
4CXE|1|2|G|2539
4CXE|1|2|C|2540
4CXE|1|2|G|2541
4CXE|1|2|A|2542
4CXE|1|2|G|2543
4CXE|1|2|G|2544

Current chains

Chain 2

28S RRNA

Nearby chains