HL_4CXE_041

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

4CXE|1|2|C|2716, 4CXE|1|2|U|2717

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_041 not in the Motif Atlas

Geometric match to HL_4V9F_004

Geometric discrepancy: 0.206

The information below is about HL_4V9F_004

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

4CXE|1|2|C|2715
4CXE|1|2|C|2716
4CXE|1|2|U|2717
4CXE|1|2|U|2718
4CXE|1|2|G|2719

Current chains

Chain 2

28S RRNA

Nearby chains