HL_4CXE_043

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

4CXE|1|2|C|2791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_043 not in the Motif Atlas

Geometric match to HL_8P9A_153

Geometric discrepancy: 0.2611

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

4CXE|1|2|U|2787
4CXE|1|2|G|2788
4CXE|1|2|A|2789
4CXE|1|2|A|2790
4CXE|1|2|C|2791
4CXE|1|2|A|2792
4CXE|1|2|G|2793

Current chains

Chain 2

28S RRNA

Nearby chains