HL_4CXE_052

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

4CXE|1|2|A|3845, 4CXE|1|2|A|3846, 4CXE|1|2|C|3847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_052 not in the Motif Atlas

Geometric match to HL_8P9A_162

Geometric discrepancy: 0.1725

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|G|3842
4CXE|1|2|G|3843
4CXE|1|2|G|3844
4CXE|1|2|A|3845
4CXE|1|2|A|3846
4CXE|1|2|C|3847
4CXE|1|2|G|3848
4CXE|1|2|G|3849
4CXE|1|2|G|3850
4CXE|1|2|C|3851

Current chains

Chain 2

28S RRNA

Nearby chains