HL_4CXE_055

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4CXE|1|2|G|4155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_055 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.3573

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4CXE|1|2|C|4153
4CXE|1|2|U|4154
4CXE|1|2|G|4155
4CXE|1|2|G|4156
4CXE|1|2|G|4157
4CXE|1|2|G|4158
4CXE|1|2|C|4159
4CXE|1|2|G|4160
4CXE|1|2|G|4161

Current chains

Chain 2

28S RRNA

Nearby chains