HL_4CXE_057

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_057 not in the Motif Atlas

Geometric match to HL_8P9A_167

Geometric discrepancy: 0.2208

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4CXE|1|2|G|4210
4CXE|1|2|A|4211
4CXE|1|2|C|4212
4CXE|1|2|A|4213
4CXE|1|2|G|4214
4CXE|1|2|A|4215
4CXE|1|2|A|4216
4CXE|1|2|A|4217
4CXE|1|2|C|4218

Current chains

Chain 2

28S RRNA

Nearby chains