HL_4CXE_087

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4CXE|1|2|G|4435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4CXE_087 not in the Motif Atlas

Geometric match to HL_4V9F_063

Geometric discrepancy: 0.2681

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4CXE|1|2|A|4434
4CXE|1|2|G|4435
4CXE|1|2|C|4436
4CXE|1|2|A|4437
4CXE|1|2|G|4438
4CXE|1|2|A|4439
4CXE|1|2|A|4440
4CXE|1|2|U|4441

Current chains

Chain 2

28S RRNA

Nearby chains