HL_4D5L_002
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UACGCACGGCCGGUACAGUGAAA
- Length
- 23 nucleotides
- Bulged bases
- 4D5L|1|1|G|66, 4D5L|1|1|A|68, 4D5L|1|1|G|74, 4D5L|1|1|C|78
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D5L|1|1|U|63
4D5L|1|1|A|64
4D5L|1|1|C|65
4D5L|1|1|G|66
4D5L|1|1|C|67
4D5L|1|1|A|68
4D5L|1|1|C|69
4D5L|1|1|G|70
4D5L|1|1|G|71
4D5L|1|1|C|72
4D5L|1|1|C|73
4D5L|1|1|G|74
4D5L|1|1|G|75
4D5L|1|1|U|76
4D5L|1|1|A|77
4D5L|1|1|C|78
4D5L|1|1|A|79
4D5L|1|1|G|80
4D5L|1|1|U|81
4D5L|1|1|G|82
4D5L|1|1|A|83
4D5L|1|1|A|84
4D5L|1|1|A|85
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain G
- 40S RIBOSOMAL PROTEIN RACK1
- Chain Y
- 40S RIBOSOMAL PROTEIN ES24
Coloring options: