4D5L Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4D5L_001 | No text annotation | ||
| HL_4D5L_002 | No text annotation | ||
| HL_4D5L_003 | GNRA related | ||
| HL_4D5L_004 | No text annotation | ||
| HL_4D5L_035 | No text annotation | ||
| HL_4D5L_005 | No text annotation | ||
| HL_4D5L_006 | T-loop with 2 stacked bulged bases | ||
| HL_4D5L_007 | No text annotation | ||
| HL_4D5L_008 | No text annotation | ||
| HL_4D5L_009 | No text annotation | ||
| HL_4D5L_010 | UNCG | ||
| HL_4D5L_011 | No text annotation | ||
| HL_4D5L_012 | No text annotation | ||
| HL_4D5L_036 | No text annotation | ||
| HL_4D5L_042 | No text annotation | ||
| HL_4D5L_013 | No text annotation | ||
| HL_4D5L_014 | GNRA variation | ||
| HL_4D5L_015 | No text annotation | ||
| HL_4D5L_016 | No text annotation | ||
| HL_4D5L_017 | No text annotation | ||
| HL_4D5L_043 | No text annotation | ||
| HL_4D5L_018 | No text annotation | ||
| HL_4D5L_019 | GNRA | ||
| HL_4D5L_037 | No text annotation | ||
| HL_4D5L_020 | No text annotation | ||
| HL_4D5L_038 | No text annotation | ||
| HL_4D5L_021 | No text annotation | ||
| HL_4D5L_044 | No text annotation | ||
| HL_4D5L_022 | GNRA | ||
| HL_4D5L_023 | GNRA | ||
| HL_4D5L_024 | No text annotation | ||
| HL_4D5L_025 | No text annotation | ||
| HL_4D5L_045 | GNRA wlth extra near cWW | ||
| HL_4D5L_039 | GNRA with extra cWW | ||
| HL_4D5L_026 | GNRA | ||
| HL_4D5L_027 | No text annotation | ||
| HL_4D5L_028 | No text annotation | ||
| HL_4D5L_029 | tRNA anticodon loop | ||
| HL_4D5L_040 | GNRA | ||
| HL_4D5L_030 | GNRA | ||
| HL_4D5L_031 | No text annotation | ||
| HL_4D5L_032 | No text annotation | ||
| HL_4D5L_041 | No text annotation | ||
| HL_4D5L_033 | GNRA | ||
| HL_4D5L_034 | GNRA variation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4D5L_102 | Isolated non-canonical cWW pair | ||
| IL_4D5L_001 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_002 | Isolated non-canonical cWW pair | ||
| IL_4D5L_083 | No text annotation | ||
| IL_4D5L_003 | Triple sheared related | ||
| IL_4D5L_004 | No text annotation | ||
| IL_4D5L_005 | Minor groove platform | ||
| IL_4D5L_103 | No text annotation | ||
| IL_4D5L_006 | No text annotation | ||
| IL_4D5L_007 | No text annotation | ||
| IL_4D5L_008 | Multiple bulged bases | ||
| IL_4D5L_009 | No text annotation | ||
| IL_4D5L_084 | No text annotation | ||
| IL_4D5L_010 | No text annotation | ||
| IL_4D5L_011 | Isolated non-canonical cWW contact | ||
| IL_4D5L_012 | No text annotation | ||
| IL_4D5L_085 | No text annotation | ||
| IL_4D5L_013 | No text annotation | ||
| IL_4D5L_086 | No text annotation | ||
| IL_4D5L_014 | Kink-turn with non-sequential stacking | ||
| IL_4D5L_015 | No text annotation | ||
| IL_4D5L_016 | No text annotation | ||
| IL_4D5L_017 | Isolated cWH basepair | ||
| IL_4D5L_018 | Isolated near basepair | ||
| IL_4D5L_019 | Single bulged U | ||
| IL_4D5L_020 | C-loop | ||
| IL_4D5L_021 | Single bulged G | ||
| IL_4D5L_022 | Single bulged A | ||
| IL_4D5L_104 | No text annotation | ||
| IL_4D5L_023 | No text annotation | ||
| IL_4D5L_024 | No text annotation | ||
| IL_4D5L_025 | Isolated non-canonical cWW pair | ||
| IL_4D5L_026 | Kink-turn related | ||
| IL_4D5L_027 | Isolated cWH basepair | ||
| IL_4D5L_028 | Isolated non-canonical cWW pair | ||
| IL_4D5L_029 | tSH-tHW-tHS | ||
| IL_4D5L_030 | Multiple bulged bases | ||
| IL_4D5L_031 | No text annotation | ||
| IL_4D5L_032 | Major groove minor groove platform; mini C-loop | ||
| IL_4D5L_033 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_034 | No text annotation | ||
| IL_4D5L_035 | Isolated cWH basepair | ||
| IL_4D5L_036 | Major groove platform; stack outside cWW | ||
| IL_4D5L_087 | Isolated non-canonical cWW pair | ||
| IL_4D5L_105 | No text annotation | ||
| IL_4D5L_037 | Isolated non-canonical cWW pair | ||
| IL_4D5L_038 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_039 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_040 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_041 | Kink-turn related | ||
| IL_4D5L_106 | Kink-turn | ||
| IL_4D5L_042 | Other IL | ||
| IL_4D5L_043 | tSH-tHW-tHS | ||
| IL_4D5L_044 | No text annotation | ||
| IL_4D5L_045 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_046 | Isolated non-canonical cWW contact | ||
| IL_4D5L_047 | Single bulged U | ||
| IL_4D5L_048 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4D5L_088 | No text annotation | ||
| IL_4D5L_049 | No text annotation | ||
| IL_4D5L_050 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_107 | No text annotation | ||
| IL_4D5L_089 | No text annotation | ||
| IL_4D5L_051 | No text annotation | ||
| IL_4D5L_090 | No text annotation | ||
| IL_4D5L_052 | Isolated non-canonical cWW pair | ||
| IL_4D5L_053 | Minor groove platform | ||
| IL_4D5L_054 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_091 | Isolated non-canonical cWW pair | ||
| IL_4D5L_092 | No text annotation | ||
| IL_4D5L_108 | No text annotation | ||
| IL_4D5L_055 | No text annotation | ||
| IL_4D5L_093 | No text annotation | ||
| IL_4D5L_056 | No text annotation | ||
| IL_4D5L_057 | Single bulged U | ||
| IL_4D5L_058 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_094 | Multiple bulged bases | ||
| IL_4D5L_059 | Minor groove platform with extra cWW | ||
| IL_4D5L_060 | Single bulged A | ||
| IL_4D5L_061 | Isolated cWH basepair | ||
| IL_4D5L_062 | Isolated non-canonical cWW contact | ||
| IL_4D5L_063 | No text annotation | ||
| IL_4D5L_095 | No text annotation | ||
| IL_4D5L_064 | No text annotation | ||
| IL_4D5L_065 | No text annotation | ||
| IL_4D5L_096 | No text annotation | ||
| IL_4D5L_066 | No text annotation | ||
| IL_4D5L_067 | Isolated non-canonical cWW pair | ||
| IL_4D5L_097 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_098 | No text annotation | ||
| IL_4D5L_068 | No text annotation | ||
| IL_4D5L_069 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_109 | Isolated non-canonical cWW pair | ||
| IL_4D5L_070 | No text annotation | ||
| IL_4D5L_071 | No text annotation | ||
| IL_4D5L_072 | No text annotation | ||
| IL_4D5L_073 | Isolated non-canonical cWW pair | ||
| IL_4D5L_074 | Non canonical cWW and near pair | ||
| IL_4D5L_075 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_099 | Isolated non-canonical cWW pair | ||
| IL_4D5L_076 | Double sheared | ||
| IL_4D5L_077 | No text annotation | ||
| IL_4D5L_078 | Isolated non-canonical cWW pair | ||
| IL_4D5L_079 | Double sheared | ||
| IL_4D5L_080 | Tandem non-canonical cWW pairs | ||
| IL_4D5L_100 | Triple sheared | ||
| IL_4D5L_081 | No text annotation | ||
| IL_4D5L_101 | Partly complementary | ||
| IL_4D5L_082 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4D5L_001 | No text annotation | ||
| J3_4D5L_002 | No text annotation | ||
| J3_4D5L_003 | No text annotation | ||
| J3_4D5L_011 | No text annotation | ||
| J3_4D5L_004 | No text annotation | ||
| J3_4D5L_012 | No text annotation | ||
| J3_4D5L_005 | No text annotation | ||
| J3_4D5L_006 | No text annotation | ||
| J3_4D5L_007 | No text annotation | ||
| J3_4D5L_008 | No text annotation | ||
| J3_4D5L_009 | No text annotation | ||
| J3_4D5L_013 | No text annotation | ||
| J3_4D5L_010 | No text annotation | ||
| J3_4D5L_014 | No text annotation | ||
| J4_4D5L_001 | No text annotation | ||
| J4_4D5L_002 | No text annotation | ||
| J4_4D5L_003 | No text annotation | ||
| J5_4D5L_001 | No text annotation | ||
| J5_4D5L_002 | No text annotation | ||
| J5_4D5L_004 | No text annotation | ||
| J5_4D5L_003 | No text annotation | ||
| J6_4D5L_003 | No text annotation | ||
| J6_4D5L_001 | No text annotation | ||
| J6_4D5L_004 | No text annotation | ||
| J6_4D5L_002 | No text annotation |
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