HL_4D5L_011
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGACCCG
- Length
- 7 nucleotides
- Bulged bases
- 4D5L|1|1|C|501
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5L_011 not in the Motif Atlas
- Geometric match to HL_5NFV_001
- Geometric discrepancy: 0.2714
- The information below is about HL_5NFV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
4D5L|1|1|C|498
4D5L|1|1|G|499
4D5L|1|1|A|500
4D5L|1|1|C|501
4D5L|1|1|C|502
4D5L|1|1|C|503
4D5L|1|1|G|504
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN ES30
- Chain Y
- 40S RIBOSOMAL PROTEIN ES24
Coloring options: