HL_4D5L_015
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 4D5L|1|1|G|821
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4D5L_015 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.349
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
4D5L|1|1|U|820
4D5L|1|1|G|821
4D5L|1|1|U|822
4D5L|1|1|U|823
4D5L|1|1|C|824
4D5L|1|1|A|825
4D5L|1|1|A|826
4D5L|1|1|A|827
4D5L|1|1|G|828
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain E
- 40S RIBOSOMAL PROTEIN ES30
- Chain J
- 40S RIBOSOMAL PROTEIN US4
- Chain Y
- 40S RIBOSOMAL PROTEIN ES24
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